Locus 5383

Sequence ID X_DroMel_CAF1
Location 14,000,809 – 14,000,899
Length 90
Max. P 0.954619
window8737

overview

Window 7

Location 14,000,809 – 14,000,899
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 97.22
Mean single sequence MFE -21.96
Consensus MFE -21.72
Energy contribution -21.72
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.43
Structure conservation index 0.99
SVM decision value 1.45
SVM RNA-class probability 0.954619
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14000809 90 - 22224390
UCGGCCCUCGCCAGUGGCCAUAAAACAAUUGCGGAACCAGCGAAAAGACGCGACAAAUUGUUUGGCCCAACAGCAAAUGCAAUCGCAACU
..(((....))).(.(((((...(((((((.((....).(((......))))...))))))))))))).........(((....)))... ( -22.30)
>DroSec_CAF1 28262 90 - 1
UCGGCCCUCGCCAGUGGCCAUAAAACAAUUGCGGAACCAGCGAAAAGACGCGACAAAUUGUUUGGCCCAACAGCAAAAGCAAUAGCAACU
..(((....))).(.(((((...(((((((.((....).(((......))))...)))))))))))))....((....)).......... ( -21.50)
>DroSim_CAF1 28555 90 - 1
UCGGCCCUCGCCAGUGGCCAUAAAACAAUUGCGGAACCAGCGAAAAGACGCGACAAAUUGUUUGGCCCAACAGCAAAAGCAAUAGCAACU
..(((....))).(.(((((...(((((((.((....).(((......))))...)))))))))))))....((....)).......... ( -21.50)
>DroEre_CAF1 27628 90 - 1
UCGGCCCUCGCCAGUGGCCAUAAAACAAUUGCGGAACCAGCGUAAAGACGCGACAAAUUGUUUGGCCCAACAGCAACAGCAACAGCAACU
..(((....))).(.(((((...(((((((.((....).((((....)))))...)))))))))))))....((....)).......... ( -23.00)
>DroYak_CAF1 29725 90 - 1
UCGGCCCUCGCCAGUGGCCAUAAAACAAUUGCGGAACCAGCGAAAAGACGCGACAAAUUGUUUGGCCCAACAGCAACAGCAAAAGCAACU
..(((....))).(.(((((...(((((((.((....).(((......))))...)))))))))))))....((....)).......... ( -21.50)
>consensus
UCGGCCCUCGCCAGUGGCCAUAAAACAAUUGCGGAACCAGCGAAAAGACGCGACAAAUUGUUUGGCCCAACAGCAAAAGCAAUAGCAACU
..(((....))).(.(((((...(((((((.((....).(((......))))...)))))))))))))....((....)).......... (-21.72 = -21.72 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:39 2006