Locus 5382

Sequence ID X_DroMel_CAF1
Location 13,998,573 – 13,998,683
Length 110
Max. P 0.518076
window8736

overview

Window 6

Location 13,998,573 – 13,998,683
Length 110
Sequences 4
Columns 114
Reading direction forward
Mean pairwise identity 78.34
Mean single sequence MFE -20.72
Consensus MFE -10.12
Energy contribution -9.38
Covariance contribution -0.75
Combinations/Pair 1.22
Mean z-score -2.25
Structure conservation index 0.49
SVM decision value -0.03
SVM RNA-class probability 0.518076
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13998573 110 + 22224390
UCGAGGUUACUACAUCCAUGGGAUUCCCCCCCAA---AAAAAACGAGUGACCAACGAAGAGCAA-AUCGCCUUCAUAAAUCAUUAUAUAUGUAUAUAAUGUCUAUAUGUCUGAC
....(((((((.......((((.......)))).---........)))))))...((((.((..-...))))))......((((((((....)))))))).............. ( -24.69)
>DroSim_CAF1 26319 93 + 1
UCGAGGUUACUCCAUCCAUGGGAUUCCCCCC------AAAAAACGAGUGACCAUCGAAGACCAA-ACCGCCUUCAUAAAUCAUUAUG--------------AUAUACGCCUGAC
((((((((((((......((((......)))------)......)))))))).)))).......-...((..((((((....)))))--------------).....))..... ( -25.00)
>DroEre_CAF1 25429 96 + 1
UCGAGGUUA---CAUCUAUGGGAUUCCCCACAAAACAAAAAAACGAGUGACCAACGAAGACCAA-ACCGCCUUCAUAAAUCAUUAUG----------AUA----UAUACCUGAC
(((.(((((---(.....((((....)))).....(........).))))))..))).......-.......((((((....)))))----------)..----.......... ( -15.10)
>DroYak_CAF1 27503 95 + 1
UCGAGGUUA---CAUCUAUGGGAUUCCCCCCAA------AAAACGAGUGACCAACGAAGACCAAAACCGCCUUCAUAAAUUAUUAUG----------ACAUUUGUAUGCCCGAC
(((.(((..---......((((......)))).------...(((((((.....((...........))...((((((....)))))----------))))))))..)))))). ( -18.10)
>consensus
UCGAGGUUA___CAUCCAUGGGAUUCCCCCCAA____AAAAAACGAGUGACCAACGAAGACCAA_ACCGCCUUCAUAAAUCAUUAUG__________AUA__UAUAUGCCUGAC
(((.(((............(((....)))................(((((.....((((...........)))).....))))).......................)))))). (-10.12 =  -9.38 +  -0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:38 2006