Locus 5381

Sequence ID X_DroMel_CAF1
Location 13,990,939 – 13,991,050
Length 111
Max. P 0.592660
window8735

overview

Window 5

Location 13,990,939 – 13,991,050
Length 111
Sequences 4
Columns 116
Reading direction forward
Mean pairwise identity 84.20
Mean single sequence MFE -22.93
Consensus MFE -19.58
Energy contribution -19.45
Covariance contribution -0.13
Combinations/Pair 1.13
Mean z-score -1.46
Structure conservation index 0.85
SVM decision value 0.12
SVM RNA-class probability 0.592660
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13990939 111 + 22224390
--GAUUUGAUUUUUUGA---UUAAUAAAAUAUCAUUAUUCUGUGCAAAUUUGUUCUCAGUGUGGUCGCAGUUGGGCUUAAUGUGCCAUAACUCACCAUAUACCCAUACACUGGCAC
--((..((((.(((((.---....))))).))))....)).((((.....(((.....(((((((.(.((((((((.......))).)))))))))))))......)))...)))) ( -23.50)
>DroSec_CAF1 23993 114 + 1
--GAUUUCAUUUUUAGUAACAUGAUAUUAUAUCAUUAUUCUGUGCAAAUUUAUUCUCAGUGUGGUCGCAGUUGGGCUUAAUGUGCCAUAACUCACCAUACACCCAUACACUGGCAC
--............((....((((((...))))))....))((((.............(((((((.(.((((((((.......))).)))))))))))))...((.....)))))) ( -23.50)
>DroSim_CAF1 24335 114 + 1
--GAUUUAAUUUUUAGUAACAUAAUAUUAUAUCAUUACUCUGUGCAAAUUUAUUCUCAGUGUGGUCGCAGUUGGGCUUAAUGUGCCAUAACUCACCAUACACCCAUACACUGGCAC
--(((.((((..(((......))).)))).)))........((((.............(((((((.(.((((((((.......))).)))))))))))))...((.....)))))) ( -23.70)
>DroYak_CAF1 25534 102 + 1
AAUAUUUCAUUUAUAGUCGCUUAACAA---A-----------UGCAAAUUUGUUCUCAGUGUGGUCGCAGCUGGGCUUAAUGUGCCAUAACUCACCAUACACCCACACACUGGCAC
...............(((....(((((---(-----------(....)))))))....(((((((.(.((...(((.......)))....))))))))))...........))).. ( -21.00)
>consensus
__GAUUUCAUUUUUAGUAACAUAAUAAUAUAUCAUUAUUCUGUGCAAAUUUAUUCUCAGUGUGGUCGCAGUUGGGCUUAAUGUGCCAUAACUCACCAUACACCCAUACACUGGCAC
.........................................((((.....(((.....(((((((.(.((((((((.......))).)))))))))))))....))).....)))) (-19.58 = -19.45 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:37 2006