| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,979,267 – 13,979,363 |
| Length | 96 |
| Max. P | 0.759901 |
| Location | 13,979,267 – 13,979,363 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 80.64 |
| Mean single sequence MFE | -31.72 |
| Consensus MFE | -19.27 |
| Energy contribution | -20.97 |
| Covariance contribution | 1.69 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.759901 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13979267 96 - 22224390 --------------GCAACGCGAGGAACCUCAAAGUGGCAGCCAAAUGGGCGUAUGAAAUGCAAUUAAAUUAAAUUUGCAGUUUUCACGAGUCCAG---UGGC------GUGGUGUCCA --------------(((.((((((....))).........((((..(((((...((((((((((...........)))))..)))))...))))).---))))------))).)))... ( -29.00) >DroPse_CAF1 116583 118 - 1 CGGCAACGGCACCGGCAACAAGAACCACCACAAAGUGGCAGCCAAAUGGGCGUAUGAAAUGCAAUUAAAUUAAAUUUGCAGUU-GCAAGUGUCCAUGAGGGGCAAGAAGGCGGAGUCCA .(....)(((.(((.(........((((......))))..(((..(((((((..((...(((((...........)))))...-.))..)))))))....))).....).))).))).. ( -36.80) >DroSim_CAF1 12407 96 - 1 --------------GCAACGCGAGGAACCUCAAAGUGGCAGCCAAAUGGGCGUAUGAAAUGCAAUUAAAUUAAAUUUGCAGUUUUCACGAGUCCAG---UGGC------GUGGUGUCCA --------------(((.((((((....))).........((((..(((((...((((((((((...........)))))..)))))...))))).---))))------))).)))... ( -29.00) >DroEre_CAF1 6714 96 - 1 --------------GCAGCGCGAGGAACCUCAAAGUGGCAGCCAAAUGGGCGUAUGAAAUGCAAUUAAAUUAAAUUUGCAGUUUUCACGAGUCCAG---UGGC------GUGGUGUCCA --------------(((.((((((....))).........((((..(((((...((((((((((...........)))))..)))))...))))).---))))------))).)))... ( -31.10) >DroYak_CAF1 13145 98 - 1 --------------GCAACGCGAGGAACCUCAAAGUGGCAGCCAAAUGGGCGUAUGAAAUGCAAUUAAAUUAAAUUUGCAGUUUUCACGAGUCCAGCG-UGGA------GUGCUGUCCA --------------.......(((....)))...(..(((.(((..(((((...((((((((((...........)))))..)))))...)))))...-))).------.)))..)... ( -27.90) >DroPer_CAF1 137381 117 - 1 -GGCAACGGCACCGGCAACAAGAACCACCACAAAGUGGCAGCCAAAUGGGCGUAUGAAAUGCAAUUAAAUUAAAUUUGCAGUU-GCAAGUGUCCAUGAGGGGCAAGAAGGCGGAGUCCG -(....)(((.(((.(........((((......))))..(((..(((((((..((...(((((...........)))))...-.))..)))))))....))).....).))).))).. ( -36.50) >consensus ______________GCAACGCGAGGAACCUCAAAGUGGCAGCCAAAUGGGCGUAUGAAAUGCAAUUAAAUUAAAUUUGCAGUUUUCACGAGUCCAG___UGGC______GUGGUGUCCA ..............((.((..(((....)))...)).)).((((..(((((...((((.(((((...........)))))...))))...)))))....))))................ (-19.27 = -20.97 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:27 2006