| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,976,188 – 13,976,300 |
| Length | 112 |
| Max. P | 0.629382 |
| Location | 13,976,188 – 13,976,300 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 76.52 |
| Mean single sequence MFE | -20.46 |
| Consensus MFE | -9.65 |
| Energy contribution | -10.17 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.47 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.629382 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13976188 112 - 22224390 AUCGCCCCUUCUCACAAU-UUUGUCAACUGGCGAUCCGAACAAGCUAA-AAAAAAAAACACAGGCUUAAGAUCAGCCAAGUCAAACUCAAACACUCCUUGUUCCCAAUUCCACU ((((((..((..((....-..))..))..))))))..(((((((....-.............((((.......)))).((.....)).........)))))))........... ( -18.10) >DroSec_CAF1 9355 106 - 1 ACCCCCCCGU--CGCAAU-UUUGUCAACUGGCGAUCCGAACAC-CUAAAAAAAAAAAACACAGGCUUAGGAUCAGCCAGUG--GACUCAAAC-CU-CCUGUUCCCGAUUCCAUU ........((--((....-...(((.(((((((((((.....(-((...............)))....))))).)))))).--)))...(((-..-...)))..))))...... ( -22.96) >DroSim_CAF1 9451 107 - 1 ACCCCCCCGU--CGCAAU-UUUGUCAACUGGCGAUCCGAACAAGCUAAAAAA--AAAAGGCAGGCUUAAGAUCAGCCAAUU--GACUCAAACACUCCAUGUUCCCGAUUUCACU ........((--((....-...(((((.((((((((.....(((((......--........)))))..)))).)))).))--)))...((((.....))))..))))...... ( -19.94) >DroEre_CAF1 3609 100 - 1 --GCCCCCCU--CUCAUU-UUUGUCAACUGGCGAUUCGAACAGGCUGAAA-------CGCCGGGCUUAGGAUCAGCCGAGU--GACUUGAACACUCCUUGUUCCCACUUCCAUU --(((.....--..((..-..))......))).....(((((((((((..-------..((.......)).))))))((((--(.......)))))..)))))........... ( -25.02) >DroYak_CAF1 9962 103 - 1 ACUCCCUCCU--CUCAUUUUUUGUCAACUGGCCAACCGAACAUGCUAAAA-------UACCAAGCUUAAGAUCAGCCAAGU--GACUUAAGCACUCCAUGUUCCCAAUUCCAAC ..........--................(((......(((((((......-------......(((((((.(((......)--)))))))))....)))))))......))).. ( -16.29) >consensus ACCCCCCCCU__CGCAAU_UUUGUCAACUGGCGAUCCGAACAAGCUAAAAAA__AAAACACAGGCUUAAGAUCAGCCAAGU__GACUCAAACACUCCAUGUUCCCAAUUCCACU ....................(((((....)))))...(((((((..............((..((((.......))))..))...............)))))))........... ( -9.65 = -10.17 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:24 2006