Locus 5372

Sequence ID X_DroMel_CAF1
Location 13,969,820 – 13,969,923
Length 103
Max. P 0.762616
window8717

overview

Window 7

Location 13,969,820 – 13,969,923
Length 103
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 81.89
Mean single sequence MFE -29.20
Consensus MFE -20.24
Energy contribution -20.43
Covariance contribution 0.20
Combinations/Pair 1.22
Mean z-score -1.99
Structure conservation index 0.69
SVM decision value 0.51
SVM RNA-class probability 0.762616
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13969820 103 - 22224390
UAUUUUUAUUAGCCUGACUUGACUGAAUUCGGGACUUUGGGUUUUCUGUGUCAGCAAAAGGUUAAAGCCACCGGUCAAGUUCAAGGCGUGAGAAAUAAGAC---AA
(((((((....((((((((((((((......((.((((((.((((.(((....))))))).))))))))..))))))))))..))))...)))))))....---.. ( -31.70)
>DroPse_CAF1 101513 100 - 1
UAUUUUUAUUAGCCUGACAC-ACAGCAU--GGCGCUCGCUUGUUGCGGCCACAACGAAAGGUCAAAUUUGUUAGUCAAGUUCAAGGCGUGAGAAGUAAAAC---AA
(((((((....(((((((.(-.(((((.--(((....)))))))).).......(....)))).((((((.....))))))..))))...)))))))....---.. ( -24.60)
>DroSec_CAF1 3002 103 - 1
UAUUUUUAUUAGCCUGACUUGACUGAAUUCGGGACUCUGGGUUUUCUGUGUCAGCAAAAGGUUAAAGCCACCGGUCAAGUUCAAGGCGUGAGAAAUAAGAC---AA
(((((((....(((((((((((((((((((((....)))))))................(((....)))..))))))))))..))))...)))))))....---.. ( -29.80)
>DroSim_CAF1 3073 103 - 1
UAUUUUUAUUAGCCUGACUUGACUGAAUUCGGGACUCUGGGUUUUCUGUGUCAGCGAAAGGUUAAAGCCACCGGUCAAGUUCAAGGCGUGAGAAAUAAGAC---AA
(((((((....((((((((((((((..((((.(((.(..........).)))..)))).(((....)))..))))))))))..))))...)))))))....---.. ( -32.30)
>DroYak_CAF1 3472 103 - 1
UAUUUUUAUUAGCCUGACUUGACUGAAUUCGGGACUCUGGGUUCUCUGUGUCAGCAAAAGGUUAAAGCCACCGGUCAAGUUCAAGGCGUGAGAAAUAAAAC---AA
(((((((....(((((((((((((((((((((....))))))))...............(((....)))...)))))))))..))))...)))))))....---.. ( -31.10)
>DroPer_CAF1 103505 103 - 1
UAUUUUUAUUAGCCUGACAC-ACAGCAU--GGCGCUCGCCUGUUGCAGCCACAACGAAAGGUCAAAUUUGUUAGUCAAGUUCAAGGCGUGAGAAGUGAAACCAAAA
(((((((....(((((((..-.(((((.--(((....)))))))).........(....)))).((((((.....))))))..))))...)))))))......... ( -25.70)
>consensus
UAUUUUUAUUAGCCUGACUUGACUGAAUUCGGGACUCUGGGUUUUCUGUGUCAGCAAAAGGUUAAAGCCACCGGUCAAGUUCAAGGCGUGAGAAAUAAAAC___AA
(((((((....((((((((((((((.....((.((............)).)).......((......))..))))))))))..))))...)))))))......... (-20.24 = -20.43 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:22 2006