Locus 5369

Sequence ID X_DroMel_CAF1
Location 13,968,075 – 13,968,193
Length 118
Max. P 0.760456
window8714

overview

Window 4

Location 13,968,075 – 13,968,193
Length 118
Sequences 3
Columns 118
Reading direction forward
Mean pairwise identity 72.64
Mean single sequence MFE -19.93
Consensus MFE -14.87
Energy contribution -14.43
Covariance contribution -0.44
Combinations/Pair 1.18
Mean z-score -1.15
Structure conservation index 0.75
SVM decision value 0.50
SVM RNA-class probability 0.760456
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13968075 118 + 22224390
GACAUGUGAUUGAAUGAAUUUGAAAACUAUCAUAAUAUACACGAUAUUAUUAUCCAUAAGAGCACACCUAGUUCUUGACACCAUUUUCUCUCAGUGCACUUCCCCGAGGUGAGAGUGG
..(((...(((((..(((..((.........(((((((.....)))))))......(((((((.......)))))))....))..)))..))))).((((((...))))))...))). ( -21.30)
>DroSec_CAF1 1327 93 + 1
GAUA------------------------ACAAUAAUGUAAACCAUUUUAUUGUCCAUAA-AUCACACUUAGUUUUUCAAACCAUUUUCUCCCAGUGUACUUCCCCGAGGAGAGAGUGG
....------------------------(((((((...........)))))))......-....................(((((((((((..(.(......).)..))))))))))) ( -17.80)
>DroSim_CAF1 1414 93 + 1
GAUA------------------------ACAAUAAUGUAAACCACUUUAUUGUCCGUAU-AUCACAUUUAGUUUUUCAAACCAUUUUCUCCCAGUGUACUUCCCCGAGGAGAGAGUGG
((((------------------------(((((((.((.....)).))))))).....)-))).................(((((((((((..(.(......).)..))))))))))) ( -20.70)
>consensus
GAUA________________________ACAAUAAUGUAAACCAUUUUAUUGUCCAUAA_AUCACACUUAGUUUUUCAAACCAUUUUCUCCCAGUGUACUUCCCCGAGGAGAGAGUGG
............................(((((((.((.....)).)))))))...........................(((((((((((..(.(......).)..))))))))))) (-14.87 = -14.43 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:19 2006