Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,966,668 – 13,966,766 |
Length | 98 |
Max. P | 0.810831 |
Location | 13,966,668 – 13,966,766 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 73.51 |
Mean single sequence MFE | -11.50 |
Consensus MFE | -8.92 |
Energy contribution | -9.03 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.09 |
Mean z-score | -1.16 |
Structure conservation index | 0.78 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.810831 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13966668 98 - 22224390 UCAUAUGUAUGUAUCUAUGGCAUGGAAUGGACAAAGCCCAUUCCCAUUCC------CAUUCCCAAUCCUAUUCCCAUUCCCAUUCUCGAUCCCAAGUCCAUUUC ................((((.(((((((((.......))))).))))..)------)))............................................. ( -11.70) >DroSim_CAF1 26 90 - 1 --A------------UAUGGCAUAGAGUGGACAAAGCCCAUUGCCAUUCCCAUUUCCAUUACCAAUCCUAUUCGCAUUCCCAUUCUCGAUCCCCAGUUCAUUUC --.------------.((((....((((((.(((......)))))))))......))))............................................. ( -10.10) >DroYak_CAF1 211 94 - 1 --A--------UAUCUAUGGCAUGGAAUGGACAAAGCCCAUUCCCAUUCCCAUUCCCAGUGCAAGUCCCAAUCCCAAUUCCAAUUCCAAACCCAAGUCCAUUUC --.--------........(((((((((((...................)))))))..)))).......................................... ( -12.71) >consensus __A________UAUCUAUGGCAUGGAAUGGACAAAGCCCAUUCCCAUUCCCAUU_CCAUUACCAAUCCUAUUCCCAUUCCCAUUCUCGAUCCCAAGUCCAUUUC ..................((.(((((((((.......))))).)))).))...................................................... ( -8.92 = -9.03 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:18 2006