Locus 5367

Sequence ID X_DroMel_CAF1
Location 13,964,463 – 13,964,564
Length 101
Max. P 0.564289
window8712

overview

Window 2

Location 13,964,463 – 13,964,564
Length 101
Sequences 4
Columns 108
Reading direction forward
Mean pairwise identity 92.66
Mean single sequence MFE -36.52
Consensus MFE -29.78
Energy contribution -30.09
Covariance contribution 0.31
Combinations/Pair 1.07
Mean z-score -1.57
Structure conservation index 0.82
SVM decision value 0.06
SVM RNA-class probability 0.564289
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13964463 101 + 22224390
GAGAGGAUGGGUGGA-------UGCGGCGCAAGUUUAUUUCGUAUGCCAAGUAACGGCAGCUCAGUGCAGCUGUUGUUGCACGCGACUUUAUCCUUCAAAUGUCCUUG
..((((((.((.(((-------((.(((((...........((.((((.......))))))...(((((((....)))))))))).)).))))).))....)))))). ( -35.90)
>DroSec_CAF1 15893 101 + 1
GGGCGGGCGGGUGUA-------UGCGGCGCAAGUUUAUUUCGUAUGCCAAGUAACGGCAGCUCAGUGCAGCUGUUGUUGCACGCGACUUUAUCCUUCAAAUGUCCUUG
(((((.(((((((((-------((.(((....))).....))))))))..((((((((((((......)))))))))))).)))((.........))...)))))... ( -36.70)
>DroSim_CAF1 16422 101 + 1
GGGCGGGUGGGUGUA-------UGCGGCGCAAGUUUAUUUCGUAUGCCAAGUAACGGCAGCUCAGUGCAGCUGUUGUUGCACGCGACUUUAUCCUUCAAAUGUCCUUG
(((((..((((((((-------((.(((....))).....))))))))..((((((((((((......))))))))))))................))..)))))... ( -36.40)
>DroYak_CAF1 16300 108 + 1
GGCUGGAUGGGUGGAUGGGUGGUGCGGCCCAAGUUUAUUUCGUAUGCCAAGUAACGGCAGCUCAGUGCAGCUGUUGUUGCACGCGACUUUAUCCUUCAAAUGUCCUUG
....(((((..((((.(((((.((((((....(.......)....)))..((((((((((((......))))))))))))..)))....)))))))))..)))))... ( -37.10)
>consensus
GGGCGGAUGGGUGGA_______UGCGGCGCAAGUUUAUUUCGUAUGCCAAGUAACGGCAGCUCAGUGCAGCUGUUGUUGCACGCGACUUUAUCCUUCAAAUGUCCUUG
....(((((..((((.......(((((((...(.......)...))))..((((((((((((......))))))))))))..))).........))))..)))))... (-29.78 = -30.09 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:17 2006