Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,960,996 – 13,961,108 |
Length | 112 |
Max. P | 0.761024 |
Location | 13,960,996 – 13,961,108 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 87.25 |
Mean single sequence MFE | -19.00 |
Consensus MFE | -16.65 |
Energy contribution | -16.90 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.60 |
Structure conservation index | 0.88 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.761024 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13960996 112 + 22224390 CUGAUUAUUAU------UUAUCCUGAUUAUCCUUACCAAUGUAACUGGUAUACCCCGAUUCGCAUACCCUGCACAUCUGCCCCUAUAUAGGGUAUAAAAAUUGCACUUUUUUCGCAAU ...........------.(((((((........(((((.......)))))......(((..(((.....)))..)))..........))))))).....(((((.........))))) ( -15.90) >DroSec_CAF1 12543 114 + 1 CUAACAACUCUUGAA----CUCCUGAUUAUCCUUACCAAUGGAACUGGUAUACCCCGAUUUGCAUACCCUGCACAUCUGCCCCUAUAUAGGGUAUGAAAAUUGCACUUUUUUCGCAAU ............(((----..............(((((.......))))).....((((((.(((((((((((....)))........)))))))).)))))).......)))..... ( -19.90) >DroSim_CAF1 13059 118 + 1 CUUAUAACUUUUGAUUUUUCUCCUGAUUAUCCUUACCAAUGUAACUGGUAUACCCCGUUUCGCAUACCCUGCACAUCUGCCCCUAUAUAGGGUAUGAAAAUUGCACUUUUUUCGCAAU ............(((...((....))..)))..(((((.......)))))............(((((((((((....)))........))))))))...(((((.........))))) ( -18.60) >DroYak_CAF1 12878 118 + 1 CCAAAAAGAUUUAAUUCUUAUCCUGAUUAUCCUUACCAAUGCAACUGGUAUACCCCAAAUCACAUACCCUGCACCUCUGCCCCUAUAUAGGGUAUGAAAAUUGCACUUUUUUCGCAAU .....((((......))))....(((((.....(((((.......))))).......)))))(((((((((((....)))........))))))))...(((((.........))))) ( -21.60) >consensus CUAAUAACUUUUGAU__UUAUCCUGAUUAUCCUUACCAAUGUAACUGGUAUACCCCGAUUCGCAUACCCUGCACAUCUGCCCCUAUAUAGGGUAUGAAAAUUGCACUUUUUUCGCAAU .................................(((((.......)))))............(((((((((((....)))........))))))))...(((((.........))))) (-16.65 = -16.90 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:14 2006