Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,531,132 – 1,531,225 |
Length | 93 |
Max. P | 0.986547 |
Location | 1,531,132 – 1,531,225 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 79.73 |
Mean single sequence MFE | -22.94 |
Consensus MFE | -17.09 |
Energy contribution | -16.85 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.07 |
Mean z-score | -2.44 |
Structure conservation index | 0.74 |
SVM decision value | 2.05 |
SVM RNA-class probability | 0.986547 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1531132 93 - 22224390 CCUGAACCAAAAUCCAAAGUCUAGAAU--------------CUAAA-------AAUCAGGAUGUGGGAUCCAGAGGCCAGGACCUGGCCACAACACAACAUAUAACACUUAGAA .((((......((((...((((.((..--------------.....-------..)).))))...)))).....((((((...))))))...................)))).. ( -19.30) >DroSec_CAF1 4098 93 - 1 CCUGAACCACAGUCCAAAGUCUAAAAU--------------CUGAA-------AACCAGGAUGUGGGACCCAGAGGCCAGGACCUGGCCACAACACAACAUACAACACUUAGAA .(((..(((((.(((....((......--------------..)).-------.....))))))))....))).((((((...))))))......................... ( -22.50) >DroSim_CAF1 3559 93 - 1 CCUGAACCACAGUCCAAAGUCUAGAAU--------------CUGAA-------AACCAGGAUGUGGGACCCAGAGGCCAGGACCUGGCCACAACACAACAUACAACACUUAGAA .(((..(((((.(((....((......--------------..)).-------.....))))))))....))).((((((...))))))......................... ( -22.50) >DroEre_CAF1 4068 94 - 1 CCUGCCCCAGAAUCCAAAAUCUAAAAU--------UAAAAUCUGAA-------GUCCAGGAUGUGGGAUUCAGAGGCCAGGACCUGGCCA-AACACAAU-CAC---ACUUAGAA ...................(((((...--------.....((((((-------..(((.....)))..))))))((((((...)))))).-........-...---..))))). ( -24.10) >DroYak_CAF1 3990 113 - 1 CCUGUCCCAAAAUCCAAAUUCUGAAAUCUGCAAUCUAAAAUCUGAUCUUAUCGAUCCAGGAUGUGGGAUCCAGAGGCCAGGACCUGGCCACAACACAAC-UACACCACUUAGAA ..................((((((..((((..((((...((((((((.....))))..))))...)))).))))((((((...))))))..........-........)))))) ( -26.30) >consensus CCUGAACCAAAAUCCAAAGUCUAAAAU______________CUGAA_______AACCAGGAUGUGGGAUCCAGAGGCCAGGACCUGGCCACAACACAACAUACAACACUUAGAA .(((..((...((((...........................................))))...))...))).((((((...))))))......................... (-17.09 = -16.85 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:11 2006