Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,953,518 – 13,953,631 |
Length | 113 |
Max. P | 0.876913 |
Location | 13,953,518 – 13,953,631 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.28 |
Mean single sequence MFE | -23.17 |
Consensus MFE | -22.71 |
Energy contribution | -22.77 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.03 |
Mean z-score | -1.72 |
Structure conservation index | 0.98 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.876913 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13953518 113 + 22224390 -------UUUGUCAGCAUAAAUCGAUUUAUUGGGCUCCACUUCUUGCCCCUAAAUUGUUGACUUUUCAGCAUUCAUUUGUGUUAACUCGUUUCGAUUAAAAUUGUUGAUAUUGAUACGGU -------...((.(((((((((.((((((..((((..........)))).))))))(((((....)))))....))))))))).))((((.(((((.............))))).)))). ( -24.92) >DroSec_CAF1 4965 113 + 1 -------UUUGUCAGCAUAAAUCGAUUUAUUGGGCUCCACUUCUUGCCUCUAAAUUGUUGACUUUUCAGCAUUCAUUUGUGUUAACUCGUUUCGAUUAAAAUUGUUGAUAUUGAUACGGU -------...((.(((((((((.((((((..((((..........)))).))))))(((((....)))))....))))))))).))((((.(((((.............))))).)))). ( -23.02) >DroSim_CAF1 5366 113 + 1 -------UUUGUCAGCAUAAAUCGAUUUAUUGGGCUCCACUUCUUGCCCCUAAAUUGUUGACUUUUCAGCAUUCAUUUGUGUUAACUCGUUUCGAUUAAAAUUGUUGAUAUUGAUACGGU -------...((.(((((((((.((((((..((((..........)))).))))))(((((....)))))....))))))))).))((((.(((((.............))))).)))). ( -24.92) >DroYak_CAF1 5352 120 + 1 AUUUUUUUUUGUCAGCAUAAAUCGAUUUAUUGGUCUUCACUUCUUGCCCCUAAAUUGUUGACUUUUCAGCAUUCAUUUGUGUUAACUCGUUUCGAUUAAAAUUUUUGAUAUUGAUACGGU ..........((.(((((((((.((((((..(((...........)))..))))))(((((....)))))....))))))))).))((((.(((((.............))))).)))). ( -19.82) >consensus _______UUUGUCAGCAUAAAUCGAUUUAUUGGGCUCCACUUCUUGCCCCUAAAUUGUUGACUUUUCAGCAUUCAUUUGUGUUAACUCGUUUCGAUUAAAAUUGUUGAUAUUGAUACGGU ..........((.(((((((((.((((((..((((..........)))).))))))(((((....)))))....))))))))).))((((.(((((.............))))).)))). (-22.71 = -22.77 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:01 2006