Locus 5356

Sequence ID X_DroMel_CAF1
Location 13,951,814 – 13,951,924
Length 110
Max. P 0.708353
window8691

overview

Window 1

Location 13,951,814 – 13,951,924
Length 110
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 74.93
Mean single sequence MFE -22.68
Consensus MFE -14.93
Energy contribution -16.99
Covariance contribution 2.06
Combinations/Pair 1.16
Mean z-score -1.61
Structure conservation index 0.66
SVM decision value 0.37
SVM RNA-class probability 0.708353
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13951814 110 + 22224390
AUAGAUACUUUGGUUAGCUAUUUAAAUACGCUAUUUGUUCAGCUUUUUUUAUU-AACUGGAAGUUUGUUGGUUUCUUUCCGUU---------AAGCCACAGUUAAUUAAACUAUUUAUGA
(((((((.(((((((((((..........(((........)))........((-(((.(((((...........))))).)))---------)).....))))))))))).))))))).. ( -21.10)
>DroSec_CAF1 3260 120 + 1
AUAGAUACUUUGGUUAGCUAUUUAUAUACGCUAUUUGUUCAGCUUUUAUUAUUUUGCUGGAAGUUAGUUGGUUUCUUUCAGUUCUCUUAAUGAAACCACAGUUAAUAAAAAUAUUUAUGA
(((((((.(((.(((((((..........((((....((((((............))))))...))))(((((((.((.((....)).)).))))))).))))))).))).))))))).. ( -27.30)
>DroSim_CAF1 3656 120 + 1
AUAGAUACUUUGGUUAGCUAUUUAUAUACGCUAUUUGUUCAGCUUUUAUUAUUCUGCUGGAAGGUAGUUGGUUUCUUUCAGUUCUCUUUAUGAAACCACAGUUAAUAAAAAUAUUUAUGA
(((((((.(((.(((((((..........(((((((.((((((............)))))))))))))(((((((....((....))....))))))).))))))).))).))))))).. ( -28.80)
>DroYak_CAF1 3570 101 + 1
AUAGAUACUUUGGUAAGCUAUUUAAGUGCGUUAUUAGUUCAGCUUUCGAUUUU-AA--GGAAAUUUGUUUGC-------CAAA---------UACCAAAAGCUUGUUUACAAAUUUAUGA
((((((..((((((((((.........((............))((((......-..--))))....))))))-------))))---------..........(((....))))))))).. ( -13.50)
>consensus
AUAGAUACUUUGGUUAGCUAUUUAAAUACGCUAUUUGUUCAGCUUUUAUUAUU_AACUGGAAGUUAGUUGGUUUCUUUCAGUU_________AAACCACAGUUAAUAAAAAUAUUUAUGA
(((((((.(((((((((((..................((((((............)))))).......(((((((................))))))).))))))))))).))))))).. (-14.93 = -16.99 +   2.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:59 2006