Locus 5355

Sequence ID X_DroMel_CAF1
Location 13,949,807 – 13,949,920
Length 113
Max. P 0.583210
window8690

overview

Window 0

Location 13,949,807 – 13,949,920
Length 113
Sequences 4
Columns 119
Reading direction forward
Mean pairwise identity 91.14
Mean single sequence MFE -51.73
Consensus MFE -39.66
Energy contribution -41.23
Covariance contribution 1.56
Combinations/Pair 1.03
Mean z-score -1.65
Structure conservation index 0.77
SVM decision value 0.10
SVM RNA-class probability 0.583210
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13949807 113 + 22224390
CCUGAUCGCCGGCUGCGUUGCUUGAUCUGGCCG-CUGGAUUUG--GACUCGAUUGGUCCAGUCG--CAAUCCUUAGGCCCAAAACUGGGAGUUGGGAACUGGCAGCUGG-GAGUCGGCG
.(((((..((((((((.((((..((((..(...-)..))))((--((((.....))))))...)--)))((((....((((....))))....))))....))))))))-..))))).. ( -46.10)
>DroSec_CAF1 1248 115 + 1
CCUGAUCGCCGGCUGCGUUGCUUGAUCUGGCCG-CUGGAUCCGGGGACUGGAUUGGUCCAGUCG--CAAUCCUUGGGCCCAAAACUGGGAGUUGGGAACUGGCAGCUGG-GAGUCGGCG
.(((((..((((((((.((((..((((..(...-)..))))....(((((((....))))))))--)))((((....((((....))))....))))....))))))))-..))))).. ( -52.40)
>DroSim_CAF1 1655 115 + 1
CCUGAUCGCCGGCUGCGUUGCUUGAUCUGGCCG-CUGGAUCCGGGGACUGGAUUGGUCCAGUCG--CAAUCCUUGGGCCCAAAACUGGGAGUUGGGAACUGGCAGCUGG-GAGUCGGCG
.(((((..((((((((.((((..((((..(...-)..))))....(((((((....))))))))--)))((((....((((....))))....))))....))))))))-..))))).. ( -52.40)
>DroYak_CAF1 1547 111 + 1
CCUGAUCGCCGGCUGCGUUGCUUGAUCUGGCCGACUGGAUCC--------GCUUGGACCAGUCGCCCAAUCCUUAGGCCCAAAACUGGGAGUUGGGCACCGGCAGCUGGGGAGUCGGCG
.((((((.((((((((...(((......))).((((((.(((--------....)))))))))((((((..(((((........)))))..))))))....)))))))).)).)))).. ( -56.00)
>consensus
CCUGAUCGCCGGCUGCGUUGCUUGAUCUGGCCG_CUGGAUCCG__GACUGGAUUGGUCCAGUCG__CAAUCCUUAGGCCCAAAACUGGGAGUUGGGAACUGGCAGCUGG_GAGUCGGCG
.((((((.((((((((.......((((..(....)..))))....((((((......))))))......((((....((((....))))....))))....)))))))).)).)))).. (-39.66 = -41.23 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:58 2006