| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,937,832 – 13,937,987 |
| Length | 155 |
| Max. P | 0.724079 |
| Location | 13,937,832 – 13,937,948 |
|---|---|
| Length | 116 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 84.72 |
| Mean single sequence MFE | -26.43 |
| Consensus MFE | -21.66 |
| Energy contribution | -21.47 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.724079 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13937832 116 + 22224390 CACCCCAAUCAAAUGGCAGCUAUAUGGUCAAUAGUUUAACA----UUAGUGCGUCGCUAAUAGAAGAGCCACGUAAUAUUAUGCGUUAAACACGCACGCACUGCGUAAAAUCAUGAAUUC ....(((......)))......((((((.....(((((((.----.((((((((.(((........))).))))...))))...)))))))(((((.....)))))...))))))..... ( -22.80) >DroSec_CAF1 17502 120 + 1 CACCCCAAUCAAAUGGCAACUAUAUUGCCAAUAGUUUAACAGUUAAUAGUGCCUCGCUAAUAGAAGAGCCACGUAAUAUCAUGCGUUAAACUCGCACGCACUGCGUGAAAUCACGAAUUC .............((((((.....))))))..((((((((........(((.(((..........))).)))(((......)))))))))))..(((((...)))))............. ( -26.70) >DroEre_CAF1 19208 120 + 1 CACCCCAAUCAAAUGGCAACUGUAUUGCCAACAGUUUUACAAUAAAUAGCGACACGCUAUUAGAAGAGGCACGUAUUAUCAUGCGUUACACUCGCACGCACUGCGUGAAAUCACGAAAUC .............((((((.....)))))).((((.........(((((((...)))))))....(((..((((((....))))))....)))......))))((((....))))..... ( -27.50) >DroYak_CAF1 21166 120 + 1 CACUCCAAUCAAAUGGCAACUGCAUUGCCAAUAUCUUUACAAUAAAUAGUGUCACGCUGUUAGAAGAGGCACGCAUUAUCAUGCGUUACACUCGCACGCAUUGCGUGAAAUCACGAAAUA ........((...((((((.....))))))..................((((((((((((.....(((..((((((....))))))....)))....)))..))))))...))))).... ( -28.70) >consensus CACCCCAAUCAAAUGGCAACUAUAUUGCCAAUAGUUUAACAAUAAAUAGUGCCACGCUAAUAGAAGAGCCACGUAAUAUCAUGCGUUAAACUCGCACGCACUGCGUGAAAUCACGAAAUC ........((...((((((.....))))))..............(((((((...))))))).)).((..((((((......((((.......)))).....))))))...))........ (-21.66 = -21.47 + -0.19)
| Location | 13,937,872 – 13,937,987 |
|---|---|
| Length | 115 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 85.91 |
| Mean single sequence MFE | -28.73 |
| Consensus MFE | -22.11 |
| Energy contribution | -22.80 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.77 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.509343 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13937872 115 + 22224390 A----UUAGUGCGUCGCUAAUAGAAGAGCCACGUAAUAUUAUGCGUUAAACACGCACGCACUGCGUAAAAUCAUGAAUUCGAGCGAGAGGGAUAUACUAUU-AUAAUUUAAGUCUGUCAA .----.((((((((.(((........))).)).........(((((.....))))).)))))).......................((.((((........-.........)))).)).. ( -20.93) >DroSec_CAF1 17542 119 + 1 AGUUAAUAGUGCCUCGCUAAUAGAAGAGCCACGUAAUAUCAUGCGUUAAACUCGCACGCACUGCGUGAAAUCACGAAUUCGAGCGAGAGGGAUAUACUAUU-AUAAUGUAAGUCUGUCAA ...((((((((..((.((............(((((......)))))....(((((.((.....((((....))))....)).))))))).))..)))))))-)................. ( -28.40) >DroEre_CAF1 19248 120 + 1 AAUAAAUAGCGACACGCUAUUAGAAGAGGCACGUAUUAUCAUGCGUUACACUCGCACGCACUGCGUGAAAUCACGAAAUCGAGCGAGAGGGAUAUACUAUUCUUAAUUAAGGCCUGUCAA ....(((((((...))))))).((..((((((((((....))))))....(((((.((.....((((....))))....)).)))))(((((((...))))))).......)))).)).. ( -34.70) >DroYak_CAF1 21206 119 + 1 AAUAAAUAGUGUCACGCUGUUAGAAGAGGCACGCAUUAUCAUGCGUUACACUCGCACGCAUUGCGUGAAAUCACGAAAUAGAGCGAGAGGGAUAUACUAUU-UAAAUUAAAGUCUGUCAA ..((((((((((..(.((.........(..((((((....))))))..).(((((.(..(((.((((....)))).))).).))))))).)..))))))))-))................ ( -30.90) >consensus AAUAAAUAGUGCCACGCUAAUAGAAGAGCCACGUAAUAUCAUGCGUUAAACUCGCACGCACUGCGUGAAAUCACGAAAUCGAGCGAGAGGGAUAUACUAUU_AUAAUUAAAGUCUGUCAA ....(((((((...))))))).((..(((((((((......)))))....(((((.((.....((((....))))....)).)))))........................)))).)).. (-22.11 = -22.80 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:57 2006