Locus 5353

Sequence ID X_DroMel_CAF1
Location 13,937,672 – 13,937,792
Length 120
Max. P 0.765684
window8687

overview

Window 7

Location 13,937,672 – 13,937,792
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 93.19
Mean single sequence MFE -36.30
Consensus MFE -29.59
Energy contribution -31.65
Covariance contribution 2.06
Combinations/Pair 1.03
Mean z-score -1.94
Structure conservation index 0.82
SVM decision value 0.51
SVM RNA-class probability 0.765684
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13937672 120 + 22224390
GAACCUGCAAUCUUCGGAUCCGAAGUCCGACGCCUUAUCCAUUAGGCCACACGGUCAGUUGUUUAAACGUGGCUUAAGUUGCCAAGAAAAGCAACUAGCUGAGCAGGGACUCGAGCAUAA
...(((((.....((((((.....)))))).((((........))))....(((..((((((((.....((((.......))))....))))))))..))).)))))............. ( -40.50)
>DroSec_CAF1 17343 120 + 1
GAACCUGCAAUCUUCGGAUCCGAAGUCCGACGCCUUAUCCAUUAGGCCACACGGUCAGUUGUUCAAACGUGGCUUAAGUUGCCAAGAAAAGCAACCAGCUGAGUAGGGACUCGAGCAUAA
.....(((.(((....))).(((.((((.((((((........))))....((((..((((((......((((.......)))).....))))))..)))).))..))))))).)))... ( -36.90)
>DroEre_CAF1 19049 120 + 1
GAACCUGCAAUCUUCGGAUCCGAAGUCCGACGCCUUAUCCAUUAGGCCACACGGUCAGUUGUUUCAACGUGGCUUAAGUUGCCAACAAAAGCAACCAGCUAAGUACGGACGCCAGCUUAA
....((((....((((....))))(((((((((((........)))).....(((..(((((((.....((((.......))))....)))))))..)))..)).)))))).)))..... ( -35.20)
>DroYak_CAF1 21007 120 + 1
GAACCUGCAAUCUUCGGAUCCGAAGUCCGACGCCUUAUCCAUUAGGCCACACGGUCAGUUGUUUCAACGUGGCUUAAGUUACCAACAAAAGCUACUAUCUAAGUAGGGAGUCAAGCUUAA
......((...(((((....)))))...(((.((((((......((((....)))).((((...))))(((((((..((.....))..))))))).......)))))).)))..)).... ( -32.60)
>consensus
GAACCUGCAAUCUUCGGAUCCGAAGUCCGACGCCUUAUCCAUUAGGCCACACGGUCAGUUGUUUAAACGUGGCUUAAGUUGCCAACAAAAGCAACCAGCUAAGUAGGGACUCGAGCAUAA
...(((((.....((((((.....)))))).((((........))))....((((.((((((((.....((((.......))))....)))))))).)))).)))))............. (-29.59 = -31.65 +   2.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:55 2006