Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,937,672 – 13,937,792 |
Length | 120 |
Max. P | 0.765684 |
Location | 13,937,672 – 13,937,792 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.19 |
Mean single sequence MFE | -36.30 |
Consensus MFE | -29.59 |
Energy contribution | -31.65 |
Covariance contribution | 2.06 |
Combinations/Pair | 1.03 |
Mean z-score | -1.94 |
Structure conservation index | 0.82 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.765684 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13937672 120 + 22224390 GAACCUGCAAUCUUCGGAUCCGAAGUCCGACGCCUUAUCCAUUAGGCCACACGGUCAGUUGUUUAAACGUGGCUUAAGUUGCCAAGAAAAGCAACUAGCUGAGCAGGGACUCGAGCAUAA ...(((((.....((((((.....)))))).((((........))))....(((..((((((((.....((((.......))))....))))))))..))).)))))............. ( -40.50) >DroSec_CAF1 17343 120 + 1 GAACCUGCAAUCUUCGGAUCCGAAGUCCGACGCCUUAUCCAUUAGGCCACACGGUCAGUUGUUCAAACGUGGCUUAAGUUGCCAAGAAAAGCAACCAGCUGAGUAGGGACUCGAGCAUAA .....(((.(((....))).(((.((((.((((((........))))....((((..((((((......((((.......)))).....))))))..)))).))..))))))).)))... ( -36.90) >DroEre_CAF1 19049 120 + 1 GAACCUGCAAUCUUCGGAUCCGAAGUCCGACGCCUUAUCCAUUAGGCCACACGGUCAGUUGUUUCAACGUGGCUUAAGUUGCCAACAAAAGCAACCAGCUAAGUACGGACGCCAGCUUAA ....((((....((((....))))(((((((((((........)))).....(((..(((((((.....((((.......))))....)))))))..)))..)).)))))).)))..... ( -35.20) >DroYak_CAF1 21007 120 + 1 GAACCUGCAAUCUUCGGAUCCGAAGUCCGACGCCUUAUCCAUUAGGCCACACGGUCAGUUGUUUCAACGUGGCUUAAGUUACCAACAAAAGCUACUAUCUAAGUAGGGAGUCAAGCUUAA ......((...(((((....)))))...(((.((((((......((((....)))).((((...))))(((((((..((.....))..))))))).......)))))).)))..)).... ( -32.60) >consensus GAACCUGCAAUCUUCGGAUCCGAAGUCCGACGCCUUAUCCAUUAGGCCACACGGUCAGUUGUUUAAACGUGGCUUAAGUUGCCAACAAAAGCAACCAGCUAAGUAGGGACUCGAGCAUAA ...(((((.....((((((.....)))))).((((........))))....((((.((((((((.....((((.......))))....)))))))).)))).)))))............. (-29.59 = -31.65 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:55 2006