Locus 5352

Sequence ID X_DroMel_CAF1
Location 13,937,073 – 13,937,179
Length 106
Max. P 0.731263
window8686

overview

Window 6

Location 13,937,073 – 13,937,179
Length 106
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 92.23
Mean single sequence MFE -16.90
Consensus MFE -13.52
Energy contribution -13.78
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.86
Structure conservation index 0.80
SVM decision value 0.42
SVM RNA-class probability 0.731263
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13937073 106 - 22224390
GUUUCCCAAUUAGGAGACAACAAGUUUAUUCAGCCAUCACAUCCAGCCACACA-----------CACCCACUCAUAGA---UGGCCUGGACCUUUACCAACAUCAUAUCCUGUUUAAUUA
((((((......))))))..........((((((((((...............-----------............))---))).))))).............................. ( -16.83)
>DroSec_CAF1 16775 104 - 1
GUUUCCCAAUUAGGAGACAACAAGUUUAUUCAGCCAUCACAUCCAGCCACA-------------CACCCACUCAUAGA---UGGCCUGGACCUUUACCAACAUCAUAUCCUGUUUAAUUA
((((((......))))))..........((((((((((.............-------------............))---))).))))).............................. ( -16.91)
>DroEre_CAF1 18097 111 - 1
GUUUCCCAAUUAGGAGACAACAAGUUUAUUCAGCCAUCACAUCCAGCCACACAC---------CCACCCACUCAUAGAUGAUGGCCUGGACCUUUACCAACAUCAUAUCCUGUUUAAUUA
((((((......))))))..........(((((((((((...............---------...............)))))).))))).............................. ( -17.41)
>DroYak_CAF1 19935 117 - 1
GUUUCCCAAUUAGGAGACAACAAGUUUAUUCAGCCAUCACAACCAGCCACACACCACCACACACCACCCACUCAUAGA---UGGCCUGGACCUUUACCAACAUCAUAUCCUGUUUAAUUA
((((((......))))))..........((((((((((......................................))---))).))))).............................. ( -16.46)
>consensus
GUUUCCCAAUUAGGAGACAACAAGUUUAUUCAGCCAUCACAUCCAGCCACACA___________CACCCACUCAUAGA___UGGCCUGGACCUUUACCAACAUCAUAUCCUGUUUAAUUA
((((((......)))))).......................((((((((................................))).))))).............................. (-13.52 = -13.78 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:54 2006