Locus 5350

Sequence ID X_DroMel_CAF1
Location 13,934,732 – 13,934,851
Length 119
Max. P 0.742179
window8681

overview

Window 1

Location 13,934,732 – 13,934,851
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 88.45
Mean single sequence MFE -22.59
Consensus MFE -17.80
Energy contribution -17.80
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.67
Structure conservation index 0.79
SVM decision value 0.45
SVM RNA-class probability 0.742179
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13934732 119 + 22224390
U-UUCAUUUUCUUUUUUUUUUUUGGCUGCUAUAUGCGGCUCCUCCUCAAAAAUACAGAGGAUAACACGAGAAAAAAAAAAACGAGAAACUUUGCAAAAAUUUUGUUAACGUAAAAAAGUC
.-....(((((((((((((((((((((((.....)))))...(((((.........))))).....)))))))))))))...)))))((((.((((.....)))).)).))......... ( -24.90)
>DroSec_CAF1 14555 110 + 1
U-UUC-------UUUAUUUUUUUGGCUGCUAUAUGCGGCUCCUCCUCGAAAAUACAGAGGAUAACACGAAAAA--AAAAAACGAGAAACUUUGCAAAAAUUUUGUUAACGUAAAAAAGUC
.-..(-------(((.(((((((((((((.....)))))...(((((.........))))).....)))))))--)...(((((((.............)))))))........)))).. ( -21.32)
>DroSim_CAF1 20326 111 + 1
U-UUC-------UUUAUUUUUUUGGCUGCUAUAUGCGGCUCCUCCUCGAAAAUACAGAGGAUAACACGAAAAA-AAAAAAACGAGAAACUUUGCAAAAAUUUUGUUAACGUAAAAAAGUC
.-..(-------(((.(((((((((((((.....)))))...(((((.........))))).....)))))))-)....(((((((.............)))))))........)))).. ( -21.32)
>DroEre_CAF1 15924 101 + 1
---------------CUUUUUUUGGCUGCUAUAUGCGGCUCCUCCUCGG-AAUAUAGAGGAUAACACGGCAAA--AAAACACGAGAAACUUUGCAAAAAUUUUGUUAACGUAAA-AAGUC
---------------((((((.(((((((.....)))))...(((((..-......)))))(((((..(((((--..............)))))........))))).)).)))-))).. ( -20.64)
>DroYak_CAF1 17516 109 + 1
GUUUU-------UUUUUUUUUUUGGCUGCUAUAUGCGGCUCCUCCUCGAAAAUACAGAGGAUAACACGGAAAA--AAA--GCGAGAAACUUUGCAAAAAUUUUGUUAACGUAAAAAAGUC
(((((-------(((((((((((((((((.....)))))...(((((.........))))).....)))))))--)))--..)))))))(((((...............)))))...... ( -24.76)
>consensus
U_UUC_______UUUAUUUUUUUGGCUGCUAUAUGCGGCUCCUCCUCGAAAAUACAGAGGAUAACACGAAAAA__AAAAAACGAGAAACUUUGCAAAAAUUUUGUUAACGUAAAAAAGUC
.................((((((((((((.....)))))...(((((.........)))))....................))))))).(((((...............)))))...... (-17.80 = -17.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:50 2006