| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,930,511 – 13,930,626 |
| Length | 115 |
| Max. P | 0.884196 |
| Location | 13,930,511 – 13,930,626 |
|---|---|
| Length | 115 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 90.77 |
| Mean single sequence MFE | -34.63 |
| Consensus MFE | -28.81 |
| Energy contribution | -30.31 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.884196 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13930511 115 + 22224390 ----CCACCCACAUCCACGUCCACAUUCACUCCUUUGCCCGAUUCUCGACAAGCCGAAAAAAAAAAUGAAGGGAGUCGAAAAAUUGAAGAUGGGCUUUGGGUGGACAGCAAUCAGAGAC ----(((((((...((.((((..(((((((((((((.........(((......)))...........)))))))).)))....))..))))))...)))))))............... ( -29.35) >DroSec_CAF1 10584 112 + 1 ----CCACCCACAUCCACGCCCACAUUCACUCCUUUGCCCGAUUCUCGACAAGCCGAAAAAAA--A-GAAGGGAGUCGGAAAAUUGGAGAUGGGCUUUGGGUGGACAGCAAUCAGAGAC ----(((((((.......(((((......((((.((..(((((((((................--.-...)))))))))..))..)))).)))))..)))))))............... ( -35.45) >DroSim_CAF1 13171 117 + 1 CCAACCACCCACAUCCACGCCCACAUUCACUCCGUUGCCCGAUUCUCGACAAGCCGAAAAAAA--AUGAAGGGAGUCGGAAAAUUGGAGAUGGGCUUUGGGUGGACAGCAAUCAGAGAC ....(((((((.......(((((......(((((((..(((((((((..((............--.))..)))))))))..)).))))).)))))..)))))))............... ( -37.82) >DroEre_CAF1 12332 116 + 1 CCAACCACCCACAUCCACACCCACACCCACUGCGUUGCCCGAUUCUCGACAAGCCGAAAAAA---AUGCAGGGAGUCGGAAAAUCGGAGGUGGCCUUUGGGUGGACAGCAAUCAGAGAC ....(((((((...((((..((.........((...))(((((((((..((...........---.))..)))))))))......))..))))....)))))))............... ( -35.90) >consensus ____CCACCCACAUCCACGCCCACAUUCACUCCGUUGCCCGAUUCUCGACAAGCCGAAAAAAA__AUGAAGGGAGUCGGAAAAUUGGAGAUGGGCUUUGGGUGGACAGCAAUCAGAGAC ....(((((((.......(((((..((((....(((..(((((((((..((...............))..)))))))))..)))))))..)))))..)))))))............... (-28.81 = -30.31 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:30 2006