Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,527,095 – 1,527,191 |
Length | 96 |
Max. P | 0.791337 |
Location | 1,527,095 – 1,527,191 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 83.51 |
Mean single sequence MFE | -26.82 |
Consensus MFE | -16.21 |
Energy contribution | -18.02 |
Covariance contribution | 1.81 |
Combinations/Pair | 1.05 |
Mean z-score | -1.82 |
Structure conservation index | 0.60 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.521383 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1527095 96 + 22224390 AGGCUCGCCAUCAUCACCAUGCCCAUCCCCAUGCGCCGCUGAAGGAAGAUGAGCAGGGAACAGCAAUACCUGCUCCCAUCCUAACAACUGAUAACG .((....))(((((((.(..((.(((....))).)).).)))((((.(..(((((((...........))))))).).))))......)))).... ( -22.30) >DroSec_CAF1 125 96 + 1 AGGCUCACCAUCAUCACCAUGCCCAUCCCCAUGCGCCGCUGGAGGAAGAUGAGCAGGGAACAGCCAUACCUGCUCCCAUCCUAACAGCCGAUCAUG .(((................)))......((((..(.((((.((((.(..(((((((...........))))))).).))))..)))).)..)))) ( -27.79) >DroEre_CAF1 119 84 + 1 AGCCUCACCACCA------------UCCCCAUGCGUCACUGGAGGAUGGUGAGCAGGGAACAGUCAUACCUGCUCCCAUCCUUACUGCCGAUCAUG .............------------....((((((.((...((((((((.(((((((...........)))))))))))))))..)).))..)))) ( -30.60) >DroYak_CAF1 1 96 + 1 AGCCUCACCACCAUCACCGCGCCCAUCCCCAUGCGCCACUGGAGGAAGAUGAGCAGGGAACAGCCAUUCCUGCUCCCAUCCUUACAGCCGAUCAUG ............(((...((((..........))))..((((((((.(..(((((((((.......))))))))).).))))).)))..))).... ( -26.60) >consensus AGCCUCACCACCAUCACCAUGCCCAUCCCCAUGCGCCACUGGAGGAAGAUGAGCAGGGAACAGCCAUACCUGCUCCCAUCCUAACAGCCGAUCAUG .............................((((..(.(((((((((....(((((((...........)))))))...))))).)))).)..)))) (-16.21 = -18.02 + 1.81)
Location | 1,527,095 – 1,527,191 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 83.51 |
Mean single sequence MFE | -36.85 |
Consensus MFE | -28.74 |
Energy contribution | -28.55 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.21 |
Mean z-score | -1.79 |
Structure conservation index | 0.78 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.791337 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1527095 96 - 22224390 CGUUAUCAGUUGUUAGGAUGGGAGCAGGUAUUGCUGUUCCCUGCUCAUCUUCCUUCAGCGGCGCAUGGGGAUGGGCAUGGUGAUGAUGGCGAGCCU ((((((((.(..(((....((((((((......))))))))(((((((((.((....((...))..))))))))))))))..)))))))))..... ( -37.30) >DroSec_CAF1 125 96 - 1 CAUGAUCGGCUGUUAGGAUGGGAGCAGGUAUGGCUGUUCCCUGCUCAUCUUCCUCCAGCGGCGCAUGGGGAUGGGCAUGGUGAUGAUGGUGAGCCU .......((((........((((((((......)))))))).((.((((.((..(((...((.(((....))).)).))).)).)))))).)))). ( -35.50) >DroEre_CAF1 119 84 - 1 CAUGAUCGGCAGUAAGGAUGGGAGCAGGUAUGACUGUUCCCUGCUCACCAUCCUCCAGUGACGCAUGGGGA------------UGGUGGUGAGGCU .......(((.........((((((((......))))))))..((((((((((((((........))))).------------.)))))))))))) ( -37.20) >DroYak_CAF1 1 96 - 1 CAUGAUCGGCUGUAAGGAUGGGAGCAGGAAUGGCUGUUCCCUGCUCAUCUUCCUCCAGUGGCGCAUGGGGAUGGGCGCGGUGAUGGUGGUGAGGCU (((.((((.((((......((((((((......)))))))).((((((((....(((........))))))))))))))))))).)))........ ( -37.40) >consensus CAUGAUCGGCUGUAAGGAUGGGAGCAGGUAUGGCUGUUCCCUGCUCAUCUUCCUCCAGCGGCGCAUGGGGAUGGGCAUGGUGAUGAUGGUGAGCCU (((.((((((((..((((.(((((((((...........))))))).)).)))).)))).((.(((....))).)).......)))).)))..... (-28.74 = -28.55 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:08 2006