Locus 5337

Sequence ID X_DroMel_CAF1
Location 13,925,197 – 13,925,317
Length 120
Max. P 0.998610
window8644

overview

Window 4

Location 13,925,197 – 13,925,317
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 98.50
Mean single sequence MFE -34.48
Consensus MFE -33.42
Energy contribution -33.58
Covariance contribution 0.16
Combinations/Pair 1.02
Mean z-score -2.21
Structure conservation index 0.97
SVM decision value 3.16
SVM RNA-class probability 0.998610
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13925197 120 + 22224390
UUCGCUGGAUCCCCCCAAUGAUGAUGAAUUGCAUUUUGCACACUUUAAUUGGAUGAAUGUGUAAUUAAGUUGUGUGCCAGUUCAUAAAUUGAAUGCAGCUCCAGCUCAACAGAUCUCGCA
...((.(((((....((((....((((((((......((((((((((((((.((....)).))))))))..))))))))))))))..))))..((.(((....)))))...))))).)). ( -33.40)
>DroSec_CAF1 5381 120 + 1
UUCGCUGGAUCCCCCCAAUGAUGAUGAAUUGCAUUUUGCACACUUUAAUUGGAUGAAUGUGUAAUUAAGUUGUGUGCCAGUUCAUAAAUUGAAUGCAGCUCCAGCUCAGCAGAUCUCGCA
...((.(((((....((((....((((((((......((((((((((((((.((....)).))))))))..))))))))))))))..))))..((((((....)))..)))))))).)). ( -34.90)
>DroSim_CAF1 7324 120 + 1
UUCGCUGGAUCCCCCCAAUGAUGAUGAAUUGCAUUUUGCACACUUUAAUUGGAUGAAUGUGUAAUUAAGUUGUGUGCCAGUUCAUAAAUUGAAUGCAGCUCCAGCUCAGCAGAUCUCGCA
...((.(((((....((((....((((((((......((((((((((((((.((....)).))))))))..))))))))))))))..))))..((((((....)))..)))))))).)). ( -34.90)
>DroEre_CAF1 7252 120 + 1
CUCGCUGGAUCCCCCCGAUGAUGAUGAAUUGCAUUUUGCACACUUUAAUUGGAUGAAUGUGUAAUUAAGUUGUGUGCCAGUUCAUAAAUUGAAUGCAGCUCCAGCGCAGCAGAUCUCGCA
...((.(((((....((((....((((((((......((((((((((((((.((....)).))))))))..))))))))))))))..))))..(((.((......)).)))))))).)). ( -34.60)
>DroYak_CAF1 6833 120 + 1
UUCGCUGGAUCCCCCCGAUGAUGAUGAAUUGCAUUUUGCACACUUUAAUUGGAUGAAUGUGUAAUUAAGUUGUGUGCCAGUUCAUAAAUUGAAUGCAGCUCCAGCUCAGCAGAUCUCGCA
...((.(((((....((((....((((((((......((((((((((((((.((....)).))))))))..))))))))))))))..))))..((((((....)))..)))))))).)). ( -34.60)
>consensus
UUCGCUGGAUCCCCCCAAUGAUGAUGAAUUGCAUUUUGCACACUUUAAUUGGAUGAAUGUGUAAUUAAGUUGUGUGCCAGUUCAUAAAUUGAAUGCAGCUCCAGCUCAGCAGAUCUCGCA
...((.(((((....((((....((((((((......((((((((((((((.((....)).))))))))..))))))))))))))..))))..((((((....)))..)))))))).)). (-33.42 = -33.58 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:18 2006