| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,923,439 – 13,923,549 |
| Length | 110 |
| Max. P | 0.685483 |
| Location | 13,923,439 – 13,923,549 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 82.30 |
| Mean single sequence MFE | -21.63 |
| Consensus MFE | -17.19 |
| Energy contribution | -17.30 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.685483 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13923439 110 + 22224390 GGUUAAUGAAAUGAGGGAAUAUUCUUUGGGAGACUAUCACCAAGCUAUGUUCAUUCAAUGCCUUCAAUUGAGUUAUGAAUAGACUAUGCAAUUAUAUGAUGUCAAUUAAU (((...((((......((((((..(((((((.....)).)))))..)))))).))))..)))...(((((((((((((((.(......).))).)))))).))))))... ( -19.40) >DroSec_CAF1 3652 102 + 1 GGUUAAUAAAAUGAGGGAAUAUUCCUUGGGAAACUAUCACCAAGUUAUGUUCAUUCAAUGCCUUCAAUUGAGUAAUGAAUUCA--------UUAAAUGAGUUCACUAAAU ................((((((..(((((((.....)).)))))..))))))(((((((.......)))))))..((((((((--------(...)))))))))...... ( -25.10) >DroSim_CAF1 5605 95 + 1 GGUUAAUAAAAUGAGGGAAUAUUCCUUGGGAAACUAUCACCAAGUUAUGUUCAUUCAAUGCCUUCAAUAGAGUAAUGAAUAGA---------------CGUUCACUAAAU ...........((((.((((((..(((((((.....)).)))))..))))))(((((.(((((.....)).))).)))))...---------------..))))...... ( -20.40) >consensus GGUUAAUAAAAUGAGGGAAUAUUCCUUGGGAAACUAUCACCAAGUUAUGUUCAUUCAAUGCCUUCAAUUGAGUAAUGAAUAGA________UUA_AUGAGUUCACUAAAU ...........(((..((((((..(((((((.....)).)))))..))))))(((((.((((.......).))).))))).....................)))...... (-17.19 = -17.30 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:15 2006