Locus 5333

Sequence ID X_DroMel_CAF1
Location 13,922,972 – 13,923,090
Length 118
Max. P 0.981881
window8639

overview

Window 9

Location 13,922,972 – 13,923,090
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 98.99
Mean single sequence MFE -31.00
Consensus MFE -29.42
Energy contribution -29.42
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.85
Structure conservation index 0.95
SVM decision value 1.90
SVM RNA-class probability 0.981881
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13922972 118 - 22224390
--UGCUGCGAGUUGAAAUGAAUGUGGUAAGCAAAACAUUAACUUGGCCGUCAUUAUUGUUGGCUCGGAGCGAAUUACGUUCUUUAAGUGAGAAAAAUUGCAAUUUAAUCGCGAUUAUGAU
--.(((.(((((..(....(((((((((((...........))).)))).))))....)..))))).)))........(((((.....))))).((((((.........))))))..... ( -29.80)
>DroSec_CAF1 3169 118 - 1
--UGCUGCGAGUUGAAAUGAAUGUGGUAAGCAAAACAUUAACUUGGCCGUCAUUAUUGUUGGCUCGGAGCGAAUUACGUUCUUUAAGUGAGAAAAAUUGCAAUUUAAUCGCGAUUAUGAU
--.(((.(((((..(....(((((((((((...........))).)))).))))....)..))))).)))........(((((.....))))).((((((.........))))))..... ( -29.80)
>DroSim_CAF1 5127 118 - 1
--UGCUGCGAGUUGAAAUGAAUGUGGUAAGCAAAACAUUAACUUGGCCGUCAUUAUUGUUGGCUCGGAGCGAAUUACGUUCUUUAAGUGAGAAAAAUUGCAAUUUAAUCGCGAUUAUGAU
--.(((.(((((..(....(((((((((((...........))).)))).))))....)..))))).)))........(((((.....))))).((((((.........))))))..... ( -29.80)
>DroEre_CAF1 5122 118 - 1
--UGCUGCGAGUUGAAAUGAAUGUGGUAAGCAAAACAUUAACUUGGCCGUCAUUAUUGUUGGCUCGGAGCGAAUUACGUUCUUUAAGUGAGAAAAAUUGCAAUUUAAUCGCGAUUAUGAU
--.(((.(((((..(....(((((((((((...........))).)))).))))....)..))))).)))........(((((.....))))).((((((.........))))))..... ( -29.80)
>DroYak_CAF1 4629 120 - 1
GUUGCUGCGAGUUGAAAUGAAUGUGGUAAGCAAAACAUUAACUUGGCCGUCAUUAUUGUUGGCUCGCAGCGAAUUACGUUCUUUAAGUGAGAAAAAUUGCAAUUUAAUCGCGAUUAUGAU
.(((((((((((..(....(((((((((((...........))).)))).))))....)..)))))))))))......(((((.....))))).((((((.........))))))..... ( -35.80)
>consensus
__UGCUGCGAGUUGAAAUGAAUGUGGUAAGCAAAACAUUAACUUGGCCGUCAUUAUUGUUGGCUCGGAGCGAAUUACGUUCUUUAAGUGAGAAAAAUUGCAAUUUAAUCGCGAUUAUGAU
..((((.(((((..(....(((((((((((...........))).)))).))))....)..))))).)))).......(((((.....))))).((((((.........))))))..... (-29.42 = -29.42 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:14 2006