Locus 5326

Sequence ID X_DroMel_CAF1
Location 13,912,784 – 13,912,891
Length 107
Max. P 0.927275
window8621

overview

Window 1

Location 13,912,784 – 13,912,891
Length 107
Sequences 3
Columns 110
Reading direction forward
Mean pairwise identity 69.91
Mean single sequence MFE -15.43
Consensus MFE -13.17
Energy contribution -13.50
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -0.76
Structure conservation index 0.85
SVM decision value 1.18
SVM RNA-class probability 0.927275
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13912784 107 + 22224390
CCGCGGCGUCCUAAUUGAAAAUAAUGUUAGUCUGCCCAUCGCCCAACGUCCCACCCAUCGGCCUCUCUCCAUUUCUC---ACGCCCAUUCAAAAAUGCACUUAAAAUAUU
..((((((..(((((..........)))))..))))....(((................)))...............---................))............ ( -12.79)
>DroSec_CAF1 13060 109 + 1
CCGCGGCGUUCUAAUUGAAAAUAAUGUUAGUCUGCCCACCGCCCAACGGCCCACCCAUCGGCCUCUCCCCAUUUCCCCCCACGCCCAUCCGAAAAUGCACUUAAAAUAU-
..((((((..(((((..........)))))..))))...........((((........)))).................................))...........- ( -17.70)
>DroSim_CAF1 34878 109 + 1
CCGCGGCGUCCUAAUUGAAAAUAAUGUUAGUCUGCCCACCGCCCAACGGCCCACCCAUCGGCCUCUCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-
..(.((((..(((((..........)))))..)))))..........((((........))))..............................................- ( -15.80)
>consensus
CCGCGGCGUCCUAAUUGAAAAUAAUGUUAGUCUGCCCACCGCCCAACGGCCCACCCAUCGGCCUCUC_CCAUUUC_C___ACGCCCAU_C_AAAAUGCACUUAAAAUAU_
..(.((((..(((((..........)))))..)))))..........((((........))))............................................... (-13.17 = -13.50 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:57 2006