Locus 5325

Sequence ID X_DroMel_CAF1
Location 13,911,361 – 13,911,479
Length 118
Max. P 0.943534
window8620

overview

Window 0

Location 13,911,361 – 13,911,479
Length 118
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 84.38
Mean single sequence MFE -31.51
Consensus MFE -24.36
Energy contribution -24.24
Covariance contribution -0.12
Combinations/Pair 1.14
Mean z-score -2.26
Structure conservation index 0.77
SVM decision value 1.34
SVM RNA-class probability 0.943534
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13911361 118 + 22224390
GCAGCUGCCUCAGUUUUUCAUUGCUUUUCCCGCUU-C-CCCCGAUGACAUCGCCAUCGUAUCUUGCCGUCAUUUUGGAUGCGACACAAUGACAAUUGCAGUGCAACUGUUACGGUUGCCC
(((((((...(((((...((((((.......((..-.-...(((((.......)))))......)).((((((.((.......)).))))))....)))))).)))))...))))))).. ( -35.40)
>DroSec_CAF1 11605 119 + 1
GCAGUUGCCUCAGUUUUUCAUUGCUUUUCCCGCUUUC-CCUAGCUGACAUCCCCCUCGUAUCUUGCCAUCAUUUUCGAUGCGGCACAAUGACAAUUGCAGUGCAACUGUUACGGUUGCCC
(((((((((((((((..((((((........(((...-...)))...........(((((((..............)))))))..)))))).))))).)).))))))))........... ( -29.24)
>DroSim_CAF1 33433 119 + 1
GCAGCUGCCUCAGUUUUUCAUUGCUUUUCCCCCUUUC-CCCCGCUGCCAUCCCCUUCGUAUCUUGCCAUCAUUUUGGAUGCGGCACAAUGACAAUUGCAGUGCAACUGCUACGGUUGCCC
(((((((...(((((...((((((.............-....(((((.((((.......................)))))))))..(((....))))))))).)))))...))))))).. ( -30.10)
>DroEre_CAF1 7462 107 + 1
GCAGCUGCCUCAGAUUUUCAUUGCUUUUCCCGCUUUCCCC--GCUGCAUUCCCCGCCGCAUC-----------UUGGAUGCGACACAAUGGCAAUUGCAGUGCAACUGUUACAGUUGCCC
(((((((...(((.....((((((..((.((((.......--...)).......(.((((((-----------...)))))).).....)).))..))))))...)))...))))))).. ( -31.10)
>DroYak_CAF1 22178 120 + 1
GCAGCUGUCUCAGUUUUUCAUUGCUUGCCCCCGUUUUCCCGUGCUGCUUACCCCUCUGUAUCUUGCCAUCAUUUUGGAUGCGACACAAUGACAAUUGCAGUGCAACUGUUACAGUUGCCC
((((((((..(((((...((.....)).............(..((((......(..(((.((...(((......)))....)).)))..)......))))..))))))..)))))))).. ( -31.70)
>consensus
GCAGCUGCCUCAGUUUUUCAUUGCUUUUCCCGCUUUC_CCCCGCUGCCAUCCCCUUCGUAUCUUGCCAUCAUUUUGGAUGCGACACAAUGACAAUUGCAGUGCAACUGUUACGGUUGCCC
(((((((...(((((...((((((................................(((((((............)))))))....(((....))))))))).)))))...))))))).. (-24.36 = -24.24 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:57 2006