Locus 5324

Sequence ID X_DroMel_CAF1
Location 13,910,645 – 13,910,742
Length 97
Max. P 0.595133
window8619

overview

Window 9

Location 13,910,645 – 13,910,742
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 96.39
Mean single sequence MFE -28.86
Consensus MFE -25.18
Energy contribution -25.18
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.30
Structure conservation index 0.87
SVM decision value 0.12
SVM RNA-class probability 0.595133
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13910645 97 + 22224390
UAUAUUGCAGUUGUCUGCGGUUUUAGCUGCUUACUCUGUGGAACACUUUCGCUUUUCGCCGGAGCAGCGGAAUAUAAUGCAGUCACAGCGACGGAUA
....(((..((((((((((..(((.(((((((.....((((((..(....)..))))))..))))))).))).....)))))..)))))..)))... ( -26.70)
>DroSec_CAF1 10899 97 + 1
UAUAUUGCAGUUGUCUGCGGUUUUAGCUGCUUACUCUGUGGAACACUUUCGCUUUUCGCUGGAGCAGCGGAAAAUAAUGCAGUCACAGCGACGGAUA
....(((..((((((((((.((((.(((((((.....((((((..(....)..))))))..))))))).))))....)))))..)))))..)))... ( -29.10)
>DroSim_CAF1 32739 97 + 1
UAUAUUGCAGUUGUCUGCGGUUUUAGCUGCUUACUCUGUGGAACACUUUCGCUUUUCGCCGGAGCAGCGGAAAAUAAUGCAGUCACAGCGACGGAUA
....(((..((((((((((.((((.(((((((.....((((((..(....)..))))))..))))))).))))....)))))..)))))..)))... ( -28.40)
>DroEre_CAF1 6788 96 + 1
UAUAUUCCAGUUGUCUGCGG-UUUAGCUGCUUACUCUGUGGAACACUUUCGCUUUUCGCCGGAGCAGCGGAAAAUAAUGCAGUCACAGCUACGGAUA
.....((((((((((((((.-(((.(((((((.....((((((..(....)..))))))..)))))))..)))....)))))..))))))..))).. ( -28.90)
>DroYak_CAF1 21448 97 + 1
UAUAUUCCGGUUGUCUGCGGCUUUAGCUGCUUACUCUGUGGAACACUUUCGCUUUUCGCCGGAGCAGCGGAAAAUAAUGCAGCCACAGCUACGGAUA
.....((((...((..(((((....)))))..)).((((((..((.(((((((.(((....))).))))))).....))...))))))...)))).. ( -31.20)
>consensus
UAUAUUGCAGUUGUCUGCGGUUUUAGCUGCUUACUCUGUGGAACACUUUCGCUUUUCGCCGGAGCAGCGGAAAAUAAUGCAGUCACAGCGACGGAUA
.........((((((((((..(((.(((((((.....((((((..(....)..))))))..))))))).))).....)))))..)))))........ (-25.18 = -25.18 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:56 2006