Locus 5322

Sequence ID X_DroMel_CAF1
Location 13,907,542 – 13,907,646
Length 104
Max. P 0.862794
window8616

overview

Window 6

Location 13,907,542 – 13,907,646
Length 104
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 77.03
Mean single sequence MFE -21.94
Consensus MFE -15.28
Energy contribution -14.08
Covariance contribution -1.20
Combinations/Pair 1.39
Mean z-score -1.71
Structure conservation index 0.70
SVM decision value 0.84
SVM RNA-class probability 0.862794
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13907542 104 - 22224390
UGCUUUCAAAUUGCUACCGACA--UUUUCUUUUGAAUUUAGUGCAUGGUCUGCAUUUCUCGCAGUGCAUUUGAGCUCAUCUGUGUACUUGAGAGUUUAAAGCCAAC
.(((((.(((((((.((((.((--(((((....)))...))))..))))..)))..(((((.(((((((.((....))...))))))))))))))))))))).... ( -24.90)
>DroSec_CAF1 7955 85 - 1
---------------------AUAUCUUCCUUAGAAUUUAGCGCAUGCUCUGCGUUUCUCUCAGUGCAUUUAAGCUCAUCUGUGUACUUGAGAGUUUAAAGCCAAC
---------------------.........(((((....((((((.....)))))).((((((((((((............)))))).)))))))))))....... ( -19.30)
>DroSim_CAF1 29753 83 - 1
---------------------A--CUUUCUUUAGAAUUUAGCGCGUGCUCUGCGUUUCUCUCAGUGCAUUUAAGCUCAUCUGUGUACUUGAGAGUUUAAAGCCAAC
---------------------.--....(((((((....((((((.....)))))).((((((((((((............)))))).)))))))))))))..... ( -21.70)
>DroEre_CAF1 3635 95 - 1
UAC----CAA---CUGCCAAGU--UUUUCUUUGGGU--UGGUGUAUGGUCUGCGUUUCUCCCAGUGCAUUUAAGCUCAUCUGCGCACUUGAGAGUUUAAAGCCAAC
(((----(((---(..(((((.--.....)))))))--)))))..(((..(....(((((..(((((......((......))))))).)))))....)..))).. ( -26.00)
>DroYak_CAF1 17995 93 - 1
UA-----------CUCCCAAGU--UUUUCUUUUGAUUUUAGCACAUGGUCUGCGUUUCUCCCAGUGCAUUUAAGCUCAUCUGUGUACUUGAGAGUUUAAAGCCAAC
.(-----------(((.(((((--....(...(((.((((((((.(((............)))))))...)))).)))...)...))))).))))........... ( -17.80)
>consensus
U____________CU_CC_A_A__UUUUCUUUAGAAUUUAGCGCAUGGUCUGCGUUUCUCCCAGUGCAUUUAAGCUCAUCUGUGUACUUGAGAGUUUAAAGCCAAC
................................(((....((((((.....))))))..)))..(.((.(((((((((.((.........))))))))))))))... (-15.28 = -14.08 +  -1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:53 2006