Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,904,591 – 13,904,704 |
Length | 113 |
Max. P | 0.697652 |
Location | 13,904,591 – 13,904,704 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 74.59 |
Mean single sequence MFE | -25.55 |
Consensus MFE | -22.54 |
Energy contribution | -21.98 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.13 |
Mean z-score | -0.69 |
Structure conservation index | 0.88 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.697652 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13904591 113 + 22224390 GUGGUUAAGGCGUCUGACUAGAAAUCAGAUUCCCUCUGGGAGCGUAGGUUCGAAUCCUACCGGCUGCGU---UUGUAAGCUUAAUU-UGUAUUUUUACAAACAAAAAAAAAUACUAU-- (..(((...((((((((.......))))))((((...))))))(((((.......))))).)))..)((---(((((((..((...-..))..)))))))))...............-- ( -29.00) >DroGri_CAF1 34397 105 + 1 GCGGUUAAGGCGUCUGACUAGAAAUCAGAUUCCCUCUGGGAGCGUAGGUUCGAAUCCUGCCGACUGCGCAAUAUCUAAAAUU-GCUUUUUU---UU-C---------AAUUUAUUUUUG ((((((...((((((((.......))))))((((...))))))(((((.......))))).))))))(((((.......)))-))......---..-.---------............ ( -27.90) >DroSec_CAF1 5105 88 + 1 GUGGUUAAGGCGUCUGACUAGAAAUCAGAUUCCCUCUGGGAGCGUAGGUUCGAAUCCUACCGGCUGCGU---UUGUAAGCAUAUUU-UUUA-------------------------U-- (..(((...((((((((.......))))))((((...))))))(((((.......))))).)))..)..---..............-....-------------------------.-- ( -21.30) >DroEre_CAF1 920 103 + 1 GUGGUUAAGGCGUCUGACUAGAAAUCAGAUUCCCUCUGGGAGCGUAGGUUCGAAUCCUACCGGCUGCGU---UUGCGAGCUAGAUU-UUUG---UG-C-----AAAAAAAUAAUUA--- (..(((...((((((((.......))))))((((...))))))(((((.......))))).)))..).(---(((((.........-....---))-)-----)))..........--- ( -24.02) >consensus GUGGUUAAGGCGUCUGACUAGAAAUCAGAUUCCCUCUGGGAGCGUAGGUUCGAAUCCUACCGGCUGCGU___UUGUAAGCUUAAUU_UUUA___UU_C_________AAAUUAUUAU__ ((((((...((((((((.......))))))((((...))))))(((((.......))))).)))))).................................................... (-22.54 = -21.98 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:42 2006