| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,904,022 – 13,904,113 |
| Length | 91 |
| Max. P | 0.979534 |
| Location | 13,904,022 – 13,904,113 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.62 |
| Mean single sequence MFE | -34.24 |
| Consensus MFE | -26.22 |
| Energy contribution | -26.82 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.77 |
| SVM decision value | 1.84 |
| SVM RNA-class probability | 0.979534 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13904022 91 + 22224390 U-CCCCUCCAGCAAUGAUCAAAGCCAAUGUGCGUGGUCAUGUAAUUGAUUACGCUGCGAUCUUCAAUGGGUAUCGCAAUUGGGAUCGGCAUU---------------------------- .-........((...((((....(((((..(((((((((......)))))))))((((((((......)).))))))))))))))).))...---------------------------- ( -29.30) >DroSec_CAF1 4549 91 + 1 U-CUCCGCCAGCAAUGAUCAAAGCCAAUAUGCGUGGUCAUGUAAUUGAUUACGCUGCGAUCUUGAAUGGGUAUCGCAAUUGGGAUCGGCAUU---------------------------- .-....((((....)((((....(((((..(((((((((......)))))))))(((((((((....))).))))))))))))))))))...---------------------------- ( -31.30) >DroSim_CAF1 26291 91 + 1 U-CUCCGCCAGCAAUGAUCAAAGCCAAUGUGCGUGGUCAUGUAAUUGAUUACGCUGCGAUCUUGAAUGGGUAUCGCAAUUGGGAUCGGCAUU---------------------------- .-....((((....)((((....(((((..(((((((((......)))))))))(((((((((....))).))))))))))))))))))...---------------------------- ( -31.30) >DroEre_CAF1 352 108 + 1 UCCCCCACCAGCAAUGAUCAAAGCCAAUGUGCGUGGUCAUGUAAUUGAUUACGCUGCGCUCUUGAAUGGGUAUCGCAAUUGGGAUCGCCAUCGGCA------------UCGCCAUCGCCA ...((((.((....)).(((((((((....(((((((((......))))))))))).))).)))).))))....((...((((((.(((...))))------------)).)))..)).. ( -32.90) >DroYak_CAF1 14743 120 + 1 UCCCCAACCAGCGAUGAUCAAAGCCAAUGUGCGUGGUCAUGUAAUUGAUUACGCUGCAAUCUUGAAUGGGUAUCGCAAUUGGGAUCGGCAUUGGCAUUGGCAUUGGCAUUGGCAUCGCCA ..........((((((.((((.(((((((((((((((((......)))))))))(((.((((..(.((.(...).)).)..))))..))).........)))))))).)))))))))).. ( -46.40) >consensus U_CCCCACCAGCAAUGAUCAAAGCCAAUGUGCGUGGUCAUGUAAUUGAUUACGCUGCGAUCUUGAAUGGGUAUCGCAAUUGGGAUCGGCAUU____________________________ ..........((..(((((....(((((..(((((((((......)))))))))(((((((((....))).))))))))))))))))))............................... (-26.22 = -26.82 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:41 2006