| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,900,775 – 13,900,874 |
| Length | 99 |
| Max. P | 0.518399 |
| Location | 13,900,775 – 13,900,874 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 78.18 |
| Mean single sequence MFE | -16.80 |
| Consensus MFE | -12.39 |
| Energy contribution | -12.20 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.74 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.518399 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13900775 99 - 22224390 AACGCCUCGAACGGGGCACAGUGGUCAAAAGUGGCAAAUGCGUAUAUAAAAAAAAAAAA-AAUGUAACAUC---AAAAUAAAGGCUUGCAAAUGUUAUAAAAA .(((((((....))))).((...((((....))))...)).))................-..(((((((((---((.........)))...)))))))).... ( -16.10) >DroSec_CAF1 1468 91 - 1 AACGCCUCGAACGGGGCACAGUGGUCAAAGUUGGCAAAAGCGUGUAUAAC--------A-AAUGUGACAUU---CAAAUAAAGGCUUGCAAAAGUUAUAAAAA ...(((((....)))))......((((...((((((......)))....)--------)-)...))))...---........(((((....)))))....... ( -16.60) >DroSim_CAF1 23230 91 - 1 AACGCCUCGAACGGGGCACAGUGGUCAAAGUUGGCAAAAGCGUGUAUAAA--------A-AAUGUGACAUU---CAAAUAAGGGCUUGAAAAAGUUAUAAAAA ...(((((....)))))(((((.((((....))))....)).))).....--------.-..((((((.((---(((........)))))...)))))).... ( -18.60) >DroYak_CAF1 11424 89 - 1 AACGCCUCGCAUGGGGCACAGUGGCCAAAAGUGGCAAAAUAGUCAAUAAA--------AUAAUGCGAAAUUAACCAAAUAA-UGUUUGAACAAGUUAC----- (((...((((((..(((......))).....((((......)))).....--------...)))))).......(((((..-.))))).....)))..----- ( -15.90) >consensus AACGCCUCGAACGGGGCACAGUGGUCAAAAGUGGCAAAAGCGUGUAUAAA________A_AAUGUGACAUU___CAAAUAAAGGCUUGAAAAAGUUAUAAAAA ((((((((....)))))......((((....))))..........................................................)))....... (-12.39 = -12.20 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:36 2006