Locus 5312

Sequence ID X_DroMel_CAF1
Location 13,898,990 – 13,899,080
Length 90
Max. P 0.794540
window8596

overview

Window 6

Location 13,898,990 – 13,899,080
Length 90
Sequences 3
Columns 91
Reading direction reverse
Mean pairwise identity 78.75
Mean single sequence MFE -22.43
Consensus MFE -11.54
Energy contribution -13.65
Covariance contribution 2.11
Combinations/Pair 1.04
Mean z-score -2.87
Structure conservation index 0.51
SVM decision value 0.60
SVM RNA-class probability 0.794540
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13898990 90 - 22224390
CAAGAAACU-GCUGGUCAGCCGUUAUUCCCAGCAGAGGAAAAAAAAAACAGGAAUUUCGAUUGGAAAAUAUUCUUCCUGUUAUUUCUUGUU
(((((((((-(((((..(.......)..)))))))...........((((((((.....(((....)))....)))))))).))))))).. ( -27.10)
>DroSim_CAF1 21401 88 - 1
CAAGAAACUGGCUGGUCAGCCGUUUUUCCCAGCAGAGGAAA---AAAACAGGAAUUUCGAUUGGAAAAUAUAUUUCCUGUUAUUUCUUGUU
(((((((..((((....)))).((((((((....).)))))---))((((((((.....(((....)))....)))))))).))))))).. ( -27.70)
>DroYak_CAF1 9781 80 - 1
CAGCAAAACUGCUGCUCAGA----------AAAAAAGGA-AAAAAAAACUGCAAUUUCGAUUGGAAAAUAUUCUUCCUGUUAUUUCUUGUU
(((((....)))))...(((----------((...((((-(........(.((((....)))).)........)))))....))))).... ( -12.49)
>consensus
CAAGAAACU_GCUGGUCAGCCGUU_UUCCCAGCAGAGGAAAAAAAAAACAGGAAUUUCGAUUGGAAAAUAUUCUUCCUGUUAUUUCUUGUU
(((((((...(((((.............))))).............((((((((.....(((....)))....)))))))).))))))).. (-11.54 = -13.65 +   2.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:35 2006