Locus 5311

Sequence ID X_DroMel_CAF1
Location 13,897,102 – 13,897,220
Length 118
Max. P 0.598345
window8595

overview

Window 5

Location 13,897,102 – 13,897,220
Length 118
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 80.90
Mean single sequence MFE -19.45
Consensus MFE -16.44
Energy contribution -16.33
Covariance contribution -0.11
Combinations/Pair 1.10
Mean z-score -1.18
Structure conservation index 0.85
SVM decision value 0.13
SVM RNA-class probability 0.598345
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13897102 118 + 22224390
GUGCGUUAGCCCCAAAACCAAUUUUCAGUAAUGACUGCAUUUUGCCGUCGUCUCAGCUUUUCCACAGCCAAGCCCCCCCAACACACACACACU--CCCGUCCCCUGGAAAGGCACCACCC
(((.((.....................(..(((((.((.....)).)))))..).(((((((((..((...))...............((...--...))....)))))))))))))).. ( -19.90)
>DroSec_CAF1 33011 118 + 1
GUGCGUUAGCCCCAAAACCAAUUUUCAGUAAUGACUGCAUUUUGCCGUCGUCUCAGCUUUUCCACAGCCA--CCCCCCCAACACACACACACACACAGGACCCCUGGAAAGCCCCCACCC
(((.(((....................(..(((((.((.....)).)))))..).(((.......)))..--.......))).))).........((((...)))).............. ( -17.50)
>DroEre_CAF1 26304 95 + 1
GUGCGUUAGCCCCAAAACCAAUUUUCAGUAAUGACUGCAUUUUGCCGUCGUCUCAGCUUUUCCAC--CC---------------ACCCACA--------CCCCCUGGAAAAGCCCCGCCU
..(((......................(..(((((.((.....)).)))))..).(((((((((.--..---------------.......--------.....)))))))))..))).. ( -20.96)
>consensus
GUGCGUUAGCCCCAAAACCAAUUUUCAGUAAUGACUGCAUUUUGCCGUCGUCUCAGCUUUUCCACAGCCA__CCCCCCCAACACACACACAC___C__GACCCCUGGAAAGGCCCCACCC
(((........................(..(((((.((.....)).)))))..).(((((((((........................................)))))))))..))).. (-16.44 = -16.33 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:34 2006