Locus 5307

Sequence ID X_DroMel_CAF1
Location 13,873,975 – 13,874,087
Length 112
Max. P 0.919300
window8588

overview

Window 8

Location 13,873,975 – 13,874,087
Length 112
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 78.11
Mean single sequence MFE -32.57
Consensus MFE -22.36
Energy contribution -21.93
Covariance contribution -0.44
Combinations/Pair 1.18
Mean z-score -1.98
Structure conservation index 0.69
SVM decision value 1.13
SVM RNA-class probability 0.919300
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13873975 112 + 22224390
UCAUACUCUUGAGUU--GG------GGGCUAUGAGCCCCAUUUUUCAGCAGUGUAACUUAUUUUUUUGGCAGAGCGUCUUGCCAACUUUGGUGAUUUCUGCCAAUUGUUGUUGGCGGGCU
..(((((.(((((..--.(------((((.....)))))....))))).)))))...(((((...(((((((......)))))))....)))))..(((((((((....))))))))).. ( -39.00)
>DroSec_CAF1 19224 118 + 1
UCAUACUUUUGAUUU--GUAUAUCUGGCUUUUGAGCCCCAUUUUUCUGCAGUGUAACGUAUUUUUUUGGCAGAGCGUCUUGCCAACUUUGGUGAUUUCUGCCGAUAGUUGUUGGCGGGCC
..((((.........--))))....((((....)))).......(((((....(((((.(((...(((((((((.(((..((((....)))))))))))))))).))))))))))))).. ( -28.40)
>DroEre_CAF1 18077 113 + 1
UUGUACUG-UAUACAACAC-----AAGCUUUUCAGCUCCGUUUUUGUGCAGUGCAACUUAUUU-UUUGGCAGAGCGUCCUGCCAACUUGGGUGAUUUCUGCCGAUAGUUGUUGGCGGGCC
.(((((((-((((.(((..-----.((((....))))..)))..)))))))))))(((((...-.(((((((......)))))))..)))))....(((((((((....))))))))).. ( -40.40)
>DroYak_CAF1 19765 111 + 1
UUUUACUUUUAUACU--AU-----AAACU--CAAGCUCAUUUUUUCUGCGGUGUAACUUAUUUUUUUGGCUGAGCGUUCUGCCAACUUUGGUGAUUUCUGCCGAUAGUUGUUGGCGGGCC
...............--..-----.....--...(((((........((.(...............).)))))))(..((((((((.(((((.......))))).....))))))))..) ( -22.46)
>consensus
UCAUACUUUUAAACU__AU_____AAGCUUUUGAGCCCCAUUUUUCUGCAGUGUAACUUAUUUUUUUGGCAGAGCGUCCUGCCAACUUUGGUGAUUUCUGCCGAUAGUUGUUGGCGGGCC
..................................((((...........................(((((((......)))))))..............((((((....)))))))))). (-22.36 = -21.93 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:28 2006