Locus 5304

Sequence ID X_DroMel_CAF1
Location 13,871,768 – 13,871,888
Length 120
Max. P 0.992883
window8582

overview

Window 2

Location 13,871,768 – 13,871,888
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 98.89
Mean single sequence MFE -57.00
Consensus MFE -57.22
Energy contribution -57.00
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -3.39
Structure conservation index 1.00
SVM decision value 2.36
SVM RNA-class probability 0.992883
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13871768 120 - 22224390
CUGCCAAUUGUUUUUGGGCCAAUCACAACGGAGUGCAAGCGUCGCAUUUCGCAUGUGGGUGUGGCCUAAAAAUGCAACCCCCUGCAGGUGGACGCGGGCAGCGCAGUCGCAGCGCUGCCG
(..((....((((((((((((.(((((.((((((((.......))))))))..)))))...))))))))))))(((......))).))..).....((((((((.......)))))))). ( -57.80)
>DroEre_CAF1 14954 120 - 1
CUGCCAAUUGUUUUUGGGCCAAUCACAACGGAGUGCAAGCGUCGCAUUUCGCAUGUGGGUGUGGCCUAAAAAUGCAACCCCCUGCAGGUGGACGCGGGCAGCGCAGUCGCGGCGCUGCCG
(..((....((((((((((((.(((((.((((((((.......))))))))..)))))...))))))))))))(((......))).))..).....((((((((.......)))))))). ( -57.70)
>DroYak_CAF1 17530 120 - 1
CUGCCAAUUGUUUUUGGGCCAAUCACAACGGAGUGCAAGCGUCGCAUUUCGCAUGUGGGUGUGGCCUAAAAAUGCAACCCCCUGCAGGUGGACGCGGGCAGCGCAGUCGCAGCGCUGCUG
(..((....((((((((((((.(((((.((((((((.......))))))))..)))))...))))))))))))(((......))).))..).....((((((((.......)))))))). ( -55.50)
>consensus
CUGCCAAUUGUUUUUGGGCCAAUCACAACGGAGUGCAAGCGUCGCAUUUCGCAUGUGGGUGUGGCCUAAAAAUGCAACCCCCUGCAGGUGGACGCGGGCAGCGCAGUCGCAGCGCUGCCG
(..((....((((((((((((.(((((.((((((((.......))))))))..)))))...))))))))))))(((......))).))..).....((((((((.......)))))))). (-57.22 = -57.00 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:23 2006