| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,869,913 – 13,870,009 |
| Length | 96 |
| Max. P | 0.837938 |
| Location | 13,869,913 – 13,870,009 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.71 |
| Mean single sequence MFE | -37.10 |
| Consensus MFE | -27.52 |
| Energy contribution | -29.97 |
| Covariance contribution | 2.45 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.837938 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13869913 96 + 22224390 GGGGGCUGA------------------------GCGUUGGGGGUUAUGGAGUCUAGUCAAAGUUUCGUAACCUUCGCCAUAAAGCCACUUAAGUGGGUCAUAAUGCAGACAAACAGCCAG ...(((((.------------------------..(.((((((((((((((.((......)))))))))))))))).)......((((....))))(((........)))...))))).. ( -32.80) >DroEre_CAF1 13078 120 + 1 GGUGGCUGGGGGGCUGGGGGGGCUGGCAGCUGGUGGCUGGGGGUUAUGGAGUCUAGUCAAAGUUUCGUAACCUUCGCCAUAAAGCCACUUAAGUGGGUCAUAAUGCAGACAAACAGCCAG ..((((((...(.(((.(..((((.((....((((((((((((((((((((.((......))))))))))))))).......)))))))...)).))))....).))).)...)))))). ( -47.31) >DroYak_CAF1 15651 112 + 1 -----AUAGGGGGAUGGAGGGGC--GCAA-UGGUGGUUGGGGGCUAUGGAGUCUAGUCAAAGUUUCGUAACCUUCGCCAUAAAGCCACUUAAGUGGGUCAUAAUGCAGACAAACAGCCAG -----...((......(((.(((--....-..(((((.(((((.(((((((.((......))))))))).))))))))))...))).)))..((..(((........)))..))..)).. ( -31.20) >consensus GG_GGCUGGGGGG_UGG_GGGGC__GCA__UGGUGGUUGGGGGUUAUGGAGUCUAGUCAAAGUUUCGUAACCUUCGCCAUAAAGCCACUUAAGUGGGUCAUAAUGCAGACAAACAGCCAG ...(((((........................(((((.(((((((((((((.((......))))))))))))))))))))....((((....))))(((........)))...))))).. (-27.52 = -29.97 + 2.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:18 2006