Locus 5299

Sequence ID X_DroMel_CAF1
Location 13,869,372 – 13,869,480
Length 108
Max. P 0.645292
window8575

overview

Window 5

Location 13,869,372 – 13,869,480
Length 108
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 91.23
Mean single sequence MFE -30.70
Consensus MFE -28.56
Energy contribution -28.38
Covariance contribution -0.19
Combinations/Pair 1.03
Mean z-score -1.37
Structure conservation index 0.93
SVM decision value 0.23
SVM RNA-class probability 0.645292
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13869372 108 + 22224390
UGUUGGCUCUAUCUAAAUGUCGUUCUAGUUGGCAUUUCGGCCUGAUCGGCUUGCUGUGCCGCUUGAUUGACAGUUUUAUUAAGACUAUGU------------ACCCAUAGAUAUGCAUGC
.....((..((((((...((((.((.(((.(((((...((((.....))))....)))))))).)).))))(((((.....)))))....------------.....)))))).)).... ( -29.10)
>DroSec_CAF1 12284 108 + 1
UGUUGGCUCUAUCUAAAUGUCGUUCUAGAUGGCAUUUCGGCCUGGUCGGCUUGCUGUGCCGCUUGAUUGACAGUUUUAUUAAGACUGUGU------------ACCCAUAGAUAUGCCUGC
.((.(((..((((((...((((.((.((.((((((...((((.....))))....)))))))).)).))))(((((.....)))))....------------.....)))))).))).)) ( -32.10)
>DroEre_CAF1 12592 108 + 1
UGUUGGCUCUAUCUAAAUGUCGUUCUAGUUGGCAUUUCGGCCUGGUCGGCUUGCUGUGCCGCUUGAUUGACAGUUUUAUUAAGACUAUGU------------ACCCAUAGAUAUGCAUGC
.....((..((((((...((((.((.(((.(((((...((((.....))))....)))))))).)).))))(((((.....)))))....------------.....)))))).)).... ( -29.10)
>DroYak_CAF1 15167 118 + 1
UGUUGGCUCUAUCUAAAUGUCGUUCUAGUUGGCAUUUCGGCCUGGUCGGCUUGCUGUGCCGCUUGAUUGACAGUUUUAUUAAGACUAUGUAUGUACAUACGUACACAUAGAUAUGUA--C
.....((..((((((...((((.((.(((.(((((...((((.....))))....)))))))).)).))))(((((.....))))).(((((((....)))))))..)))))).)).--. ( -32.50)
>consensus
UGUUGGCUCUAUCUAAAUGUCGUUCUAGUUGGCAUUUCGGCCUGGUCGGCUUGCUGUGCCGCUUGAUUGACAGUUUUAUUAAGACUAUGU____________ACCCAUAGAUAUGCAUGC
.....((..((((((...((((.((.((.((((((...((((.....))))....)))))))).)).))))(((((.....))))).....................)))))).)).... (-28.56 = -28.38 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:17 2006