Locus 5298

Sequence ID X_DroMel_CAF1
Location 13,864,181 – 13,864,282
Length 101
Max. P 0.773738
window8574

overview

Window 4

Location 13,864,181 – 13,864,282
Length 101
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 83.51
Mean single sequence MFE -26.61
Consensus MFE -19.80
Energy contribution -19.42
Covariance contribution -0.38
Combinations/Pair 1.14
Mean z-score -1.80
Structure conservation index 0.74
SVM decision value 0.54
SVM RNA-class probability 0.773738
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13864181 101 + 22224390
CGGGGAGGCGUGCAUUCCUGUCAGGUGUCCUCAAAUGAAAUCAAUUUGCCAAAUGACAUAAACAACAAAUCAAAGGGCGGCACCAACCUC-----AC-CU-------------CCUCCCU
.(((((((.(((((....))...((((((......((....))....(((...(((.............)))...))))))))).....)-----))-..-------------))))))) ( -25.72)
>DroSec_CAF1 11698 99 + 1
CGGGGAGGCGUGCAUUCCUGUCAGGUGUCCUCAAAGGGAAUCAAUUUGCCAAAUGACAUAAACA-CAAAUCAAAGGGCGGCACUAC--UC-----ACUCA-------------CCUCCUU
.((((((..((((((((((...(((...)))....)))))).....((((...(((........-....)))...))))))))..)--))-----.))).-------------....... ( -25.30)
>DroEre_CAF1 11964 99 + 1
CGGGGAGGCGUGCAUUCCUGUCAGUUGUCCUCAAAUGAAAUCAAUUUGCCAAAUGACAUAAACAACAAAUCAAAGGGCGGCACCUACCUCCG---------------------CCCCCCU
.((((.(((((.......(((((.(((....(((((.......))))).))).)))))......)).........((.((......)).)))---------------------)))))). ( -26.92)
>DroYak_CAF1 14384 119 + 1
CGGGGAGGCGUGCAUUCCUGUCAGGUGUCCUCAAAUGAAAUCAAUUUGCCAAAUGACAUAAACAACAAAUCAAAGGGCGGCACCUACCUCUAAACAC-CUCCUAACCCCCCUCCCCCCCU
.(((((((...(((....))).(((((((......((....))....(((...(((.............)))...))))))))))............-...........))))))).... ( -28.52)
>consensus
CGGGGAGGCGUGCAUUCCUGUCAGGUGUCCUCAAAUGAAAUCAAUUUGCCAAAUGACAUAAACAACAAAUCAAAGGGCGGCACCAACCUC_____AC_CU_____________CCCCCCU
.((((.((((........)))).((((((.((....)).........(((...(((.............)))...)))))))))..............................)))).. (-19.80 = -19.42 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:16 2006