Locus 5297

Sequence ID X_DroMel_CAF1
Location 13,861,019 – 13,861,139
Length 120
Max. P 0.925217
window8573

overview

Window 3

Location 13,861,019 – 13,861,139
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 88.66
Mean single sequence MFE -37.44
Consensus MFE -32.89
Energy contribution -33.08
Covariance contribution 0.19
Combinations/Pair 1.08
Mean z-score -1.94
Structure conservation index 0.88
SVM decision value 1.17
SVM RNA-class probability 0.925217
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13861019 120 + 22224390
GCUUGUUUCAGCAGGGCAUUUGACUUUCAGCAAAUGUGUCUCAAAAGUUGUGCGUUUGUAUCCGCCAGCUACAAACGCACAAAUGCGUGUUGAGGGCGUCAUUUUGCUUUUAGCCUUGAC
...........((((((...((.....))(((((((((((((((..((((((((((((((.(.....).))))))))))))...))...)))).)))).)).))))).....)))))).. ( -38.70)
>DroSec_CAF1 8645 110 + 1
G---------ACAGGGCAUUUGGCUUUCAGCAAAUGUAUCUUA-AAGUUGUGCGUUUGUAUCCGCCAGCUACAAACGCACAAAUGCGUGUUGAGGGCGUCACUCUGCUUUUAGCCUUGAC
.---------.((((((.....((((((((((...((((....-...(((((((((((((.(.....).))))))))))))))))).))))))))))((......)).....)))))).. ( -40.71)
>DroEre_CAF1 8900 115 + 1
----GUUCCAGCAGGGCAUUUGGGUUUCAGCAAAUGUAUCUUA-AAGCUGUGUGUUUGUAUCCGCCAGCUACAAACGCACAAAUGCGUGUUGAGGGCGUCACUCUGCUUUUAGCCUUGAC
----.......(((((((((((.....((((............-..))))((((((((((.(.....).)))))))))))))))))..((((((((((......)))))))))))))).. ( -34.64)
>DroYak_CAF1 11294 119 + 1
GCUGGUUCCAGCAGGGAAUUUGGAUUUCAGCUAAUGUAUCUUA-AAGUAGUGCGUUUGUAUCCGCCAGCUACAAACGCACAAAUGCGUGUUGGGGGCGUCACUUUGCUUUUAGCCUUGAC
(((((.(((((........)))))..)))))............-.....(((((((((((.(.....).)))))))))))......(.((((((((((......)))))))))))..... ( -35.70)
>consensus
G___GUUCCAGCAGGGCAUUUGGCUUUCAGCAAAUGUAUCUUA_AAGUUGUGCGUUUGUAUCCGCCAGCUACAAACGCACAAAUGCGUGUUGAGGGCGUCACUCUGCUUUUAGCCUUGAC
...........((((((........((((((..((((((........(((((((((((((.(.....).)))))))))))))))))))))))))((((......))))....)))))).. (-32.89 = -33.08 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:15 2006