| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,860,282 – 13,860,397 |
| Length | 115 |
| Max. P | 0.521574 |
| Location | 13,860,282 – 13,860,397 |
|---|---|
| Length | 115 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 94.30 |
| Mean single sequence MFE | -24.30 |
| Consensus MFE | -20.72 |
| Energy contribution | -20.61 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.85 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.521574 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13860282 115 - 22224390 UACAAACAAAAAACCGA--A-AAAGAGUAGAGCAGGCAAGUCAAUGAACCAAAAAAGGUCAAGAUGUUUGCAAAAAUCUUUUUUGCCCAUCGUCAGCUUAAUUUGUAUUUGGCAGGUU .............((((--(-...((((.((((.(((.......(((.((......))))).((((...((((((.....)))))).))))))).)))).))))...)))))...... ( -24.80) >DroSec_CAF1 7922 115 - 1 -ACAAAAAAAAAACUGA--AAAAAGAGUAGAGCAGGCAAGUCAAUGAACCAAAAAAGGUCAAGAUGUUUCCAAAAAUCUUUUUUGCCCAUCGUCAGCUUAAUUUGUAUUUGGCAGGUU -............(((.--.(((.((((.((((.(((.......(((.((......))))).((((....(((((.....)))))..))))))).)))).))))...)))..)))... ( -20.70) >DroEre_CAF1 8177 116 - 1 --AAAACAAAAAGCUGAAAAAAAAGAGUAGAGCAGGCAAGUCAAUGAACCAAAAAAGGUCAAGAUGUUUGCAAAAAUCUUUUUUGCCCAUCGUCAGCUUAAUUUGUAUUUGGCAGGUU --........(((((((.((((((((.....(((((((..((..(((.((......))))).))))))))).....))))))))........)))))))(((((((.....))))))) ( -27.40) >consensus _ACAAACAAAAAACUGA__AAAAAGAGUAGAGCAGGCAAGUCAAUGAACCAAAAAAGGUCAAGAUGUUUGCAAAAAUCUUUUUUGCCCAUCGUCAGCUUAAUUUGUAUUUGGCAGGUU ...........((((.........((((.((((.(((.......(((.((......))))).((((...((((((.....)))))).))))))).)))).))))..........)))) (-20.72 = -20.61 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:12 2006