| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,859,474 – 13,859,591 |
| Length | 117 |
| Max. P | 0.861960 |
| Location | 13,859,474 – 13,859,591 |
|---|---|
| Length | 117 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.81 |
| Mean single sequence MFE | -34.39 |
| Consensus MFE | -32.02 |
| Energy contribution | -32.02 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.861960 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13859474 117 + 22224390 CUGGACUUCCAAAAAA---CAGAUUACUAUUCGCAGUCGGUAGGAUUCGAACCUACGCUCCCAGAGGGAAUCUGAUUUCUAGUCAGACGCCUUAACCGCUCGGCCACGACUGCUUAAUGA .(((....))).....---.............((((((((((((.......)))))(((.....((((..((((((.....))))))..))))........)))..)))))))....... ( -34.32) >DroEre_CAF1 7366 119 + 1 CGGAAAUUCCAAAAAAAAACAAGUUUCUA-UCGCAGUCGGUAGGAUUCGAACCUACGCUCCCAGAGGGAAUCUGAUUUCUAGUCAGACGCCUUAACCGCUCGGCCACGACUGCUUAAUGA .(((((((.............))))))).-..((((((((((((.......)))))(((.....((((..((((((.....))))))..))))........)))..)))))))....... ( -34.24) >DroYak_CAF1 9684 118 + 1 UGGA-AUUCCAAAAAAAAACUCAUUUGCA-UCGCAGUCGGUAGGAUUCGAACCUACGCUCCCAGAGGGAAUCUGAUUUCUAGUCAGACGCCUUAACCGCUCGGCCACGACUGCUUAGUGA (((.-...))).........(((((.(((-(((..(((((((((.......)))))((......((((..((((((.....))))))..))))....)).))))..))).)))..))))) ( -34.60) >consensus CGGAAAUUCCAAAAAAAAACAAAUUUCUA_UCGCAGUCGGUAGGAUUCGAACCUACGCUCCCAGAGGGAAUCUGAUUUCUAGUCAGACGCCUUAACCGCUCGGCCACGACUGCUUAAUGA ................................((((((((((((.......)))))(((.....((((..((((((.....))))))..))))........)))..)))))))....... (-32.02 = -32.02 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:11 2006