Locus 5292

Sequence ID X_DroMel_CAF1
Location 13,854,743 – 13,854,862
Length 119
Max. P 0.972420
window8564

overview

Window 4

Location 13,854,743 – 13,854,862
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.90
Mean single sequence MFE -28.29
Consensus MFE -27.30
Energy contribution -27.14
Covariance contribution -0.16
Combinations/Pair 1.04
Mean z-score -1.46
Structure conservation index 0.97
SVM decision value 1.69
SVM RNA-class probability 0.972420
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13854743 119 + 22224390
GAGUUGCAGGCGACUUUGUCUAUGCUGCAAAAGAAUGCCUUUGGGGCAUUUAGAUAAAAAAUACAUGAAGGAGCCAAAGUCAAGCCAAAGGAUACUAAAAAACAGAUGAGCAUGGGCG-G
((((((....))))))((((((((((.((...(((((((.....))))))).................((...((..............))...))..........))))))))))))-. ( -28.64)
>DroSec_CAF1 2969 108 + 1
GAGUUGCAGGCGACUUUGUCUAUGCUGCAAAAGAAUGCCUUUGGGGCAUUUAGAUAAAAAAUACAUGAAGGAGCC-----------AAAGGAUACUAAAAAACAGAUGGGCAUGGGCG-G
((((((....))))))((((((((((......(((((((.....))))))).................((...((-----------...))...))............))))))))))-. ( -27.60)
>DroSim_CAF1 7667 108 + 1
GAGUUGCAGGCGACUUUGUCUAUGCUGCAAAAGAAUGCCUUUGGGGCAUUUAGAUAAAAAAUACAUGAAGGAGCC-----------AAAGGAUACUAAAAAACAGAUGGGCAUGGGCG-G
((((((....))))))((((((((((......(((((((.....))))))).................((...((-----------...))...))............))))))))))-. ( -27.60)
>DroEre_CAF1 2892 119 + 1
GAGUUGCUGGCGACUUUGUCUAUGCUGCAGAAGAAUGCCUUUGGGGCAUUUAGAUAAAAAAUACAUGAAGGAGCCAAAGUCAAGCCAAAGGAUACUAAAAAACAGAUGGGCAUGGGCG-G
((((((....))))))(((((((((((((......)))(((((((((.((((..((.....))..))))...))).........))))))..................))))))))))-. ( -28.80)
>DroYak_CAF1 5068 120 + 1
GAGUUGCAGGCGACUUUGUCUAUGCUGCAGAAGAAUGCCUUUGGGGCAUUUAGAUAAAAAAUACAUGAAGGAGCCAAAGUCAAGCCAAAGGAUACUAAAAAACAGAUGGGCAUGGGCGGG
((((((....))))))(((((((((((((......)))(((((((((.((((..((.....))..))))...))).........))))))..................)))))))))).. ( -28.80)
>consensus
GAGUUGCAGGCGACUUUGUCUAUGCUGCAAAAGAAUGCCUUUGGGGCAUUUAGAUAAAAAAUACAUGAAGGAGCCAAAGUCAAGCCAAAGGAUACUAAAAAACAGAUGGGCAUGGGCG_G
((((((....)))))).(((((((((......(((((((.....))))))).................((...((..............))...))............)))))))))... (-27.30 = -27.14 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:07 2006