Locus 5290

Sequence ID X_DroMel_CAF1
Location 13,853,162 – 13,853,282
Length 120
Max. P 0.896454
window8560

overview

Window 0

Location 13,853,162 – 13,853,282
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 82.60
Mean single sequence MFE -32.05
Consensus MFE -23.54
Energy contribution -23.58
Covariance contribution 0.04
Combinations/Pair 1.05
Mean z-score -2.09
Structure conservation index 0.73
SVM decision value 0.99
SVM RNA-class probability 0.896454
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13853162 120 + 22224390
AUAAAUUAUUAUUUCAUUCAUUUCAUUUUGUUCGACUUAGGUCAAUGUUUUUUUUUUUUUUUGCAGUGCAGGAUCCCGGAUCCUGGGCGCAUCCUGCUGAGGGCCAUUGGCUUUUUGGUC
.................................((((.(((((((((..............(((.((.(((((((...))))))).)))))((((....)))).)))))))))...)))) ( -31.40)
>DroSec_CAF1 1422 105 + 1
UUAAAUUAUCAU------AAUUUCAUGUUGGUCAACUUAGGUCAAUGUUU---------UUUGCAGUGCAGGAUCCCGGAUCCUGGGCGCAUCCUGUGGAGGGCCAUUGGCUUUUUGGGC
............------......((((((..(......)..))))))..---------..(((.((.(((((((...))))))).))))).(((..((((((((...))))))))))). ( -29.30)
>DroSim_CAF1 6054 105 + 1
AUAAAUUAUCAU------AAUUUCAUUUUGUUCAACUUAGGUCAAUGUUU---------UUUGCAGUGCAGGAUCCCGGAUCCUGGGCGCAUCCUGCGGAGGGCCAUUGGCUUUUUGGGC
............------...........((((((...((((((((((((---------((((((((.(((((((...))))))).))......))))))))).))))))))).)))))) ( -32.30)
>DroEre_CAF1 1372 104 + 1
AUAAAUACCCAU------CAUUUCAUUAUAUCUG-CUUAGCUGAAUAUUU---------UUUGCAGUGCAGGAUCCCGGAUCCUGGGCGCAUCCUGCGGAGGGCCAAUGGCUUUUUGGGC
.......(((..------.............(((-(..............---------...)))).((((((((((((...)))))...)))))))((((((((...))))))))))). ( -30.73)
>DroYak_CAF1 3428 103 + 1
AUAAAAAGCCAU------AAUUUUAUUUUAAAUG-CCUUAGUAAAU-UUU---------UUUGCAGUGCAGGAUCCCGGAUCCUGGGCGCAUCCUGCGGAGGGCCAUUGGCUUUUUGGGC
.((((((((((.------.((((......))))(-((((.(((((.-...---------)))))..(((((((((((((...)))))...)))))))).)))))...))))))))))... ( -36.50)
>consensus
AUAAAUUAUCAU______AAUUUCAUUUUGUUCGACUUAGGUCAAUGUUU_________UUUGCAGUGCAGGAUCCCGGAUCCUGGGCGCAUCCUGCGGAGGGCCAUUGGCUUUUUGGGC
.............................................................(((.((.(((((((...))))))).))))).....(((((((((...)))))))))... (-23.54 = -23.58 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:03 2006