Locus 5286

Sequence ID X_DroMel_CAF1
Location 13,850,713 – 13,850,832
Length 119
Max. P 0.651893
window8555

overview

Window 5

Location 13,850,713 – 13,850,832
Length 119
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 87.07
Mean single sequence MFE -33.03
Consensus MFE -30.81
Energy contribution -30.70
Covariance contribution -0.11
Combinations/Pair 1.08
Mean z-score -1.22
Structure conservation index 0.93
SVM decision value 0.25
SVM RNA-class probability 0.651893
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13850713 119 - 22224390
AUGUAGCCUGAG-CUUCGACCGUGACAGGACUCGAACCUGCAAUCUUCGGAUCCGAAGUCCGACGCCUUAUCCAUUGGGCCACACGGUCAGUUACGCAACCGGCGUCCCAAAUUCCCAAG
..(.(((....)-)).)(((((((.((((.......))))......((((((.....)))))).((((........))))..))))))).(..((((.....))))..)........... ( -35.20)
>DroSim_CAF1 4034 108 - 1
-----------G-CUACGACCGUGACAGGACUCGAACCUGCAAUCUUCGGAUCCGAAGUCCGACGCCUUAUCCAUUGGGCCACACGGUCAGUUGCGCAACCGGCGUCCCAAAUUCCCAAU
-----------.-....(((((((.((((.......))))......((((((.....)))))).((((........))))..))))))).(..((((.....))))..)........... ( -34.00)
>DroYak_CAF1 1475 109 - 1
-----------CAUUACGACCGUGACAGGACUCGAACCUGCAAUCUUCGGAUCCGAAGUCCGACGCCUUAUCCAUUAGGCCACACGGUCAGUUACGCAAUCGACGUCCGAAAUUCCGAAC
-----------......(((((((.((((.......))))......((((((.....)))))).((((........))))..)))))))..........(((.....))).......... ( -29.90)
>consensus
___________G_CUACGACCGUGACAGGACUCGAACCUGCAAUCUUCGGAUCCGAAGUCCGACGCCUUAUCCAUUGGGCCACACGGUCAGUUACGCAACCGGCGUCCCAAAUUCCCAAC
.................(((((((.((((.......))))......((((((.....)))))).((((........))))..)))))))....((((.....)))).............. (-30.81 = -30.70 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:59 2006