| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,850,408 – 13,850,499 |
| Length | 91 |
| Max. P | 0.899699 |
| Location | 13,850,408 – 13,850,499 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 71.00 |
| Mean single sequence MFE | -23.74 |
| Consensus MFE | -14.35 |
| Energy contribution | -15.13 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.60 |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.899699 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13850408 91 - 22224390 A---------------------CAUUUUGAGGCUUUUUGUGGACGGCGAUAUA----CGCCCACAGACGAAAGAGCAAAACGAAAGUAAAGGAAAGAAAGACGAAAAAUUUAGUAU---- .---------------------..(((((..(((.(((((((.((........----)).)))))))(....))))...((....))..............)))))..........---- ( -18.80) >DroSim_CAF1 3730 91 - 1 A---------------------CAUUUUGAGGCUUUUUUUGGACGGCGAUAUA----CGCCCACAGACGGAAGGGUAAAACGAAAGUUAAGGAAAGCCAGCCAAAAAAUGUAGUAU---- (---------------------((((((..((((((((((....((((.....----)))).((...(....).))..(((....)))))))))))))......))))))).....---- ( -24.40) >DroYak_CAF1 1106 120 - 1 ACCAACGACACCAGACAGGACACAUUUUGAGGCUUUUUUGGGUGGUCGAUAUACAUACGCACCGAGACGGAAGGGCGAAGCGAAAGUAAAGGAAAGCCAGCCGAAAAAUGUAGUAUACAU ..........((.....))(((((((((..((((.(((((((((.............))).))))))(....)(((...((....))........)))))))..))))))).))...... ( -28.02) >consensus A_____________________CAUUUUGAGGCUUUUUUUGGACGGCGAUAUA____CGCCCACAGACGGAAGGGCAAAACGAAAGUAAAGGAAAGCCAGCCGAAAAAUGUAGUAU____ ......................((((((..((((.((((((...((((.........))))))))))(....)......((....))...........))))..)))))).......... (-14.35 = -15.13 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:58 2006