Locus 5284

Sequence ID X_DroMel_CAF1
Location 13,849,284 – 13,849,402
Length 118
Max. P 0.867031
window8553

overview

Window 3

Location 13,849,284 – 13,849,402
Length 118
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 76.54
Mean single sequence MFE -27.93
Consensus MFE -19.64
Energy contribution -20.20
Covariance contribution 0.56
Combinations/Pair 1.08
Mean z-score -1.63
Structure conservation index 0.70
SVM decision value 0.85
SVM RNA-class probability 0.867031
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13849284 118 + 22224390
UAAAAGUAUAA--AAAAUAGUAGGAAACGUAGGAAAUUAACCUUUGGCCCUGUAAUAUGCAUAAACUCCGGAAGAUUGUUGGGAUUUGAUCAAAAAUAAGCAGUCGUGGCCGAGUGGUUA
...........--.........(....).........((((((((((((((((.....)))............(((((((...((((......)))).)))))))).))))))).))))) ( -25.30)
>DroSim_CAF1 3203 120 + 1
UAAAAGUAAAAUAAAAAUAGUAGGAAACGUAGUAAAUUAACCUUUGGCCCUGUAAUAUGCAUAAACUCCGAAAGAUUGUUGGGACUUGAUCAACAACAAGCAGUCGUGGCCGAGUGGUUA
......................(....).........((((((((((((.((.....(((........(....).(((((((.......)))))))...)))..)).))))))).))))) ( -27.20)
>DroYak_CAF1 566 105 + 1
CAUACG-ACAU--AAGC------------UAUUCGGUUAACCUUUGAACUUGUAAUUUGCAAAAACUGCGGAAGAUUGUUGGGAUCCGAUCGGCAAGAAGCAGUCGUGGCCGAGUGGUUA
......-....--.(((------------((((((((((....(((..(((((..((((((.....)))))).(((((........))))).)))))...)))...))))))))))))). ( -31.30)
>consensus
UAAAAGUAAAA__AAAAUAGUAGGAAACGUAGUAAAUUAACCUUUGGCCCUGUAAUAUGCAUAAACUCCGGAAGAUUGUUGGGAUUUGAUCAACAACAAGCAGUCGUGGCCGAGUGGUUA
.....................................((((((((((((.((.....(((........(....).(((((((.......)))))))...)))..)).))))))).))))) (-19.64 = -20.20 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:57 2006