Locus 5281

Sequence ID X_DroMel_CAF1
Location 13,825,618 – 13,825,731
Length 113
Max. P 0.796379
window8547

overview

Window 7

Location 13,825,618 – 13,825,731
Length 113
Sequences 3
Columns 114
Reading direction forward
Mean pairwise identity 83.08
Mean single sequence MFE -20.00
Consensus MFE -17.48
Energy contribution -17.03
Covariance contribution -0.44
Combinations/Pair 1.05
Mean z-score -1.54
Structure conservation index 0.87
SVM decision value 0.60
SVM RNA-class probability 0.796379
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13825618 113 + 22224390
GCAUAGUGAUCUUUGCUGUUUUUAGGACCCCUAAAAUAAACCCUUUUUCACUGCAACCCCCCGCAAUGAUCUUACUUUUGGCUGCC-CAACAGCUAUGUACAUAAAUAUACAUA
(((.((....)).)))...(((((((...)))))))...........(((.(((........))).)))...(((...((((((..-...)))))).))).............. ( -19.60)
>DroSec_CAF1 131395 97 + 1
GCAUUGUGAUCUUUGCUGGUUGUAGGACCCCUAUAAUAAACCCUUUUUCACUGCAACCCU---CAAUGAUCUUUCUUCUGGCUGCCCCAACAGCUACG--------------UA
((.....((((.(((..((((((((.........................))))))))..---))).)))).......((((((......)))))).)--------------). ( -23.41)
>DroSim_CAF1 131569 97 + 1
GCAUUGUGAUCUUUGCUGCUUGUAGGACCCCUAUAAUAAACCCUUUUUCACUGCAACCCU---CGAUGAUCUUUCUUUUGGCUGCCCCAACAGCUACG--------------UA
(((..((((..........(((((((...)))))))...........)))))))......---...............((((((......))))))..--------------.. ( -17.00)
>consensus
GCAUUGUGAUCUUUGCUGCUUGUAGGACCCCUAUAAUAAACCCUUUUUCACUGCAACCCU___CAAUGAUCUUUCUUUUGGCUGCCCCAACAGCUACG______________UA
(((..((((..........(((((((...)))))))...........)))))))........................((((((......)))))).................. (-17.48 = -17.03 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:52 2006