Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,823,918 – 13,824,017 |
Length | 99 |
Max. P | 0.612333 |
Location | 13,823,918 – 13,824,017 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 88.03 |
Mean single sequence MFE | -18.43 |
Consensus MFE | -14.12 |
Energy contribution | -14.62 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.15 |
Mean z-score | -1.53 |
Structure conservation index | 0.77 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.612333 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13823918 99 + 22224390 ----AUAUAAUAUUUAGGCCCCAACUGGAUGAUCUAAGGUGUAAAAUAUUGCACACAGAUAAGAAAUAUAUUCCGCUGGCAACAGUCUUAAUUAAGAA----AAAAU ----(((((.(((((((.......)))))))((((...((((((....))))))..))))......)))))...((((....))))............----..... ( -18.10) >DroSec_CAF1 129975 99 + 1 ----AUAUAAUAUUUAGGCCCCAACUGGAUAAUCUAAGGUGUAAAAUAUUGCACACAGAUAAGAAAUAUAUUCCGCUGGCAACAGUCUCAGUUAAUAA----AAACU ----..................((((((...((((...((((((....))))))..))))..............((((....)))).)))))).....----..... ( -18.60) >DroSim_CAF1 129871 97 + 1 ----AUAUAAUAUUUAGGCCCCAACUGGAUAAUCUAAGGUGUAAAAUAUUGCA--CAGAUAAGAAAUAUAUUCCGCUGGCAACAGUCUAAGUUAAUUA----AAACU ----(((((.(((((((.......)))))))((((...((((((....)))))--)))))......)))))...((((....))))...((((.....----.)))) ( -16.60) >DroYak_CAF1 142961 106 + 1 AUGUAUAUAAU-UUUAGGCCCCAACUGGCUAUUUCAAGGUGUAAAAUAUUGCACCCAGAUAAGAAAUGUGUUCCGCUGGCAACAGUCUUAAUUAAUAAAAAAAAACU ....(((((.(-(((.((((......))))...((..(((((((....)))))))..))..)))).)))))...((((....))))..................... ( -20.40) >consensus ____AUAUAAUAUUUAGGCCCCAACUGGAUAAUCUAAGGUGUAAAAUAUUGCACACAGAUAAGAAAUAUAUUCCGCUGGCAACAGUCUUAAUUAAUAA____AAACU ....(((((.(((((((.......)))))))((((...((((((....))))))..))))......)))))...((((....))))..................... (-14.12 = -14.62 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:51 2006