Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,515,060 – 1,515,180 |
Length | 120 |
Max. P | 0.998949 |
Location | 1,515,060 – 1,515,180 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.75 |
Mean single sequence MFE | -48.06 |
Consensus MFE | -45.36 |
Energy contribution | -45.88 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.10 |
Mean z-score | -2.13 |
Structure conservation index | 0.94 |
SVM decision value | 3.30 |
SVM RNA-class probability | 0.998949 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1515060 120 + 22224390 CCGCCGUCUACAGCCUACACAGUCACGCCCACGGCCAUGUCCUUGGGCACGCCACCUCGCCGCCGCGUCCUGGCAGCGUGGGCAGCAGUGUGGGCAGCAAUCUCUGCACCUCCACCUCCA ............((((((((.((...(((((((((..((((....)))).))).....((.((((.....)))).)))))))).)).)))))))).(((.....)))............. ( -47.00) >DroSec_CAF1 4520 120 + 1 CCGCCGUCUACAGCCUACAUAGCCACGCCCACGGCCAUGUCCUUGGACACGCCACCUCGCCGCCGCGUCCUGGCAGCGUGGGCAGCAGUGUGGGCAGCAACCUCUGCACCUCCACCUCCA ............((((((((.((...(((((((((..((((....)))).))).....((.((((.....)))).)))))))).)).)))))))).(((.....)))............. ( -48.40) >DroSim_CAF1 5742 120 + 1 CCGCCGUCUACAGCCUACAUAGCCACGCCCACGGUCAUGUCCUUGGCCACGCCACCUCGCCGCCGCGUCCUGGCAGCGUGGGCAGCAGUGUGGGCAGCAACCUCUGCACCUCCACCUCCA ............((((((((.((...(((((((((((......)))))..((((...(((....)))...))))...)))))).)).)))))))).(((.....)))............. ( -48.00) >DroEre_CAF1 4561 120 + 1 CCGCCGUCUACAGCCUACAAAGCCACGCCCACGGCCAUGUCCUGGGCCACGCCACCUCGCCGCCGCGUCCUGGCAGCGUGGGCAGCAGUGUGGGCAGCAACCUGUGCACCUCCACCUCCA ............(((((((..((...((((((((((........))))..((((...(((....)))...))))...)))))).))..))))))).(((.....)))............. ( -47.40) >DroYak_CAF1 6102 120 + 1 CCGCCGUCUACAGCCUACACAGCCACGCCCACGGCCAUGUCCUGGGCCACGCCACCUCGCCGCCGCGUCCUGGCAGCGUGGGCAGCAGUGUGGGCAGCAAUCUCUGCACCUCCACCUCCA ............((((((((.((...((((((((((........))))..((((...(((....)))...))))...)))))).)).)))))))).(((.....)))............. ( -49.50) >consensus CCGCCGUCUACAGCCUACACAGCCACGCCCACGGCCAUGUCCUUGGCCACGCCACCUCGCCGCCGCGUCCUGGCAGCGUGGGCAGCAGUGUGGGCAGCAACCUCUGCACCUCCACCUCCA ............((((((((.((...(((((((((((......)))))..((((...(((....)))...))))...)))))).)).)))))))).(((.....)))............. (-45.36 = -45.88 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:56 2006