| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,822,142 – 13,822,243 |
| Length | 101 |
| Max. P | 0.534028 |
| Location | 13,822,142 – 13,822,243 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 79.12 |
| Mean single sequence MFE | -20.88 |
| Consensus MFE | -13.54 |
| Energy contribution | -13.47 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.534028 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13822142 101 - 22224390 GAAGGACCACAUAUAUAUAAUAUACAAAAAAUUACAGAAUUUUCGUAUUUUGUGUUUGUUGAGGAUCACUUAAGUGCCCCAAAAGGUCAUGUGUUUUUCUA- (((((((.((((............(((.((((.(((((((......))))))))))).))).((..(((....)))..))........)))))))))))..- ( -20.20) >DroSec_CAF1 128231 96 - 1 GAAGGACCA----UACAUAAUAUG-AAAAAAUUACACGAUUUUCGUAUUUUGUGUUUGUUGAGGAUCACUUAAGUGCCCCAAAAGGACAUGUGUUUUUCCA- (((((((((----((((.((((((-((((..........)))))))))).)))(((..(((.((..(((....))).)))))...)))))).)))))))..- ( -22.10) >DroEre_CAF1 130859 96 - 1 GAAGGACCA----UAAAUAAUAUACAUCAAAUUACAGGAUUUUCACAUUUUGUGUUUGUUGAGGAUCACUUAAGUGUCCA--AAGGACAUGUGUGUUUUCUA (((((..((----((.........((.(((((.(((((((......)))))))))))).)).(((.(((....)))))).--.......))))..))))).. ( -19.50) >DroYak_CAF1 141103 82 - 1 GAAGGACCC----AA-------------AAAUUACAGGAUUUUUAUAUUUUGUGUUUUUUGAGGAUCACUCAAGUGGCCC--AAGGACAUGUGUUUUUCCU- (((((((.(----((-------------(((.((((((((......)))))))).)))))).((..(((....)))..))--..........)))))))..- ( -21.70) >consensus GAAGGACCA____UA_AUAAUAUA_AAAAAAUUACAGGAUUUUCAUAUUUUGUGUUUGUUGAGGAUCACUUAAGUGCCCC__AAGGACAUGUGUUUUUCCA_ ((((((((........................((((((((......))))))))....(((((.....)))))(((.((.....)).)))).)))))))... (-13.54 = -13.47 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:50 2006